- Open Access
bicoid RNA localization requires the trans-Golgi network
Hereditas volume 156, Article number: 30 (2019)
The formation of the bicoid (bcd) mRNA gradient is a crucial step for Bcd protein gradient formation in Drosophila. In the past, a microtubule (MT)-based cortical network had been shown to be indispensable for bcd mRNA transport to the posterior.
We report the identification of a MT-binding protein CLASP/Chb as the first component associated with this cortical MT network. Since CLASPs in vertebrates were shown to serve as an acentriolar microtubule organization center (aMTOC) in concert with trans-Golgi proteins, we examined the effect of the Drosophila trans-Golgins on bcd localization and gradient formation. Using a genetic approach, we demonstrate that the Drosophila trans-Golgins dGCC88, dGolgin97 and dGCC185 indeed affect bcd mRNA localization during oocyte development. Consequently, the bcd mRNA is already mislocalized before the egg is fertilized. The expression domains of genes downstream of the hierarchy of bcd, e.g. of the gap gene empty spiracles or of the pair-rule gene even-skipped are changed, indicating an altered segmental anlagen, due to a faulty bcd gradient. Thus, at the end of embryogenesis, trans-Golgin mutants show bcd-like cuticle phenotypes.
Our data provides evidence that the Golgi as a cellular member of the secretory pathway exerts control on bcd localization which indicates that bcd gradient formation is probably more intricate than previously presumed.
In Drosophila, the Bicoid (Bcd) concentration gradient along the cortex provides essential positional information on the development of the anterior-posterior axis where it functions as a morphogen. Bcd as a maternal factor is at the top of the hierarchy of segmentation genes that controls via its gradient, the expression of the gap genes which are expressed in broader domains. The gap genes in turn control genes of the next level of the hierarchy, the pair-rule genes. Members of this class are usually expressed in 7 stripes and provide a double-segment identity. The pair-rule genes control the segmentation genes which then provide cues in every single segment. Once the identity of the segments is determined, cells in every segment are specified by the homeotic genes which ensures that these cells do not lose their identity during embryogenesis.
In the past, to explain the occurrence of the morphogen gradient, the hypothesis of a diffusion-driven model (the SDD model, synthesis, diffusion and uniform degradation; ) resulting in Bcd gradient formation was widely accepted, securing this concept in the literature for more than two decades. However, in order to establish a stable gradient within 90 min, a diffusion coefficient (D) of Bcd larger than 2 μm2/s was calculated to be required for this process . With the advancement of techniques including fluorescence correlation spectroscopy (FCS) and fluorescence recovery after photobleaching (FRAP), the diffusion coefficient could be measured more precisely. Direct and indirect measurements of the Bcd diffusion coefficient were all consistent with D ~ 0.3 μm2/s , roughly two orders of magnitude lower than expected and thus inconsistent with a simple diffusion model. Several possible scenarios were proposed by [2, 3] to explain the more rapid movement of the Bcd protein. Firstly, Bcd could move faster in the cytoplasm than along the cortex, where the diffusion was measured; secondly, the diffusion rate could change with time, faster during the first hour after fertilization, then slower at later stages, when the coefficient was measured. The third proposal involves active Bcd transport rather than simple diffusion. Since 2007, further progress was made in the accuracy of measuring diffusion constants, and reports claimed higher diffusion rates [4,5,6]. These were proposed to be sufficiently high enough to explain the SDD model. In contrast, a recent report showed that Bcd does not move in a broad front through the egg, as the SDD model predicts [7, 8], rather it moved along the cortex, as did the mRNA. This data, based on simple experiments immediately refuted the SDD model because it showed that the assumptions of the protein diffusing in a broad front were erroneous.
In 2009, an alternative model was reported , termed the ARTS model (active RNA transport and synthesis [7,8,9,10]. Here, the formation of the Bcd gradient is based on the existence of a mRNA gradient, mediated by active transport of the mRNA along microtubules (MTs) which exhibits the same variability in shape. This constituted a fourth explanation which resolved most of the constraints that were inherent with the SDD model, reviewed by . Quantitative assays of bcd mRNA and Bcd-GFP protein in real-time indicated that the graded mRNA movement made an essential contribution to generating the protein gradient . This finding does not imply that the mRNA diffusion would replace protein diffusion, since the diffusion rate of bcd mRNA could be much higher than that of the Bcd protein.
Other models of how the bcd gradient could be established were described, an example involving nucleocytoplasmic shuttling of the Bcd protein . In this model, the nuclei would serve as traps to slow down diffusion of Bcd. However, since the nuclei are located in the interior (yolk), while Bcd was shown to move to the periphery , the location of the two players is by no means overlapping, thus making this model rather circumstantial, if not obsolete.
This calls into question of how the bcd mRNA gradient is established within the same short period. In oocytes, substantial evidence exists that MTs are involved in both transportation and localization of the bcd mRNA [13, 14]. Not only bcd, but also the movement of the particles of the posterior determinant oskar (osk), a MT-dependent process that is crucial for its localization at the posterior end . Besides, the RNA binding protein Staufen (Stau) shown to mediate MT-dependent transport, is a member of the large bcd ribonuclear protein (RNP) during the first 2 h of development [9, 16]. The entire oocyte MT network is disassembled before egg activation, hence, the fertilized embryo must build up a new MT-based transportation machinery from scratch. Recently, a newly-assembled omnidirectional MT network and a motor for bcd mRNA transport was detected at the cortex of early staged embryos  fulfilling all the criteria for a transportation system that was predicted . To conclude, active bcd mRNA transport as the primary step for Bcd protein gradient formation is now widely accepted, and consistent with the observation of subtle Bcd protein movement along the cortex [7, 8].
It should be noted that all MT-arrays that direct axial patterning are disassembled into short and non-oriented MT filaments throughout the last two stages of oogenesis [17,18,19], which force the fertilized embryo to build up a new MT network. Consistent with the proposed MT-network for mRNA transport detected by , the cortical MTs network resides in the anterior half of early nuclear cycle (nc) 1–6 embryos. To shed more light on the nature of the cortical MTs, we extended our analysis on factors affecting the cortical MT network and bcd mRNA transport. We found that trans-Golgi components affect the formation of the bcd mRNA gradient. Our data demonstrates that the process of bcd gradient formation is probably far more complex than previously anticipated.
Chromosome bows is part of the MT network that forms the bcd mRNA gradient
To explain the observation of the bcd mRNA gradient  during early nuclear cycles of Drosophila development, a search for a MT-based transportation system was initiated, leading to the discovery of a specific anterior MT network shown to be indispensable for bcd mRNA gradient formation . Attempts to define the directionality of the MTs by co-staining the cortical MT threads with minus-end and plus-end markers failed for most markers, possibly because there is no ‘conventional’ microtubule organizing center (MTOC) at the cortex or because the harsh fixation conditions that allowed for the staining of the anterior cortical network were not suitable for antibodies directed against MT-polarity-defining proteins. The only protein that allowed co-localization with the MT threads was Chromosome bows (Chb) , formerly called Mast/Orbit/CLASP [21, 22], a protein defining the MT-plus-end (Fig. 1c, f, Additional file 3: Video S1). Chb localization along the MT-threads was not continuous, but appeared rather patchy (Fig. 1, b, c, e, f). The MT-ends were usually free of Chb staining and hence did not allow us to define the directionality of the MT-threads. Interestingly, in vertebrates, Chb was shown to mediate asymmetric nucleation of non-centrosomal MTs at the trans-Golgi network, with the help of the trans-Golgin marker GCC185 [23, 24]. We reasoned that the specific anterior MT network at the cortex could be nucleated by the trans-Golgi network and hence could contribute to build up an acentriolar microtubule organizing center (aMTOC). We therefore sought to investigate the role of trans-Golgins in bcd localization and gradient formation using genetic approaches that compromise the function of trans-Golgins.
Additional file 3: Video S1 Chb and Tubulin in the anterior MT network. Video of the 3D-reconstruction of the full confocal stack shown as a representative single section in Fig. 1f to reveal the MT network (red) and Chb staining (green) in the anterior half of a nc 5 embryo. (MP4 25986 kb)
trans-Golgins participate in bcd localization and gradient formation
The Drosophila genome contains four prominent trans-Golgin genes identified as dGCC88, dGolgin97 (also called centrosome’s beautiful sister (cbs)), dGCC185 and dGolgin245, which are structurally well conserved compared to their vertebrate counterparts . We considered if trans-Golgins were involved in bcd signaling and analyzed the cuticles of trans-Golgin mutants in order to identify bcd-like phenotypes. Since dGolgin245 mutants do not show an overt phenotype and are viable , the roles of the three remaining trans-Golgi proteins were investigated using RNAi fly lines [26, 27].
The GAL4-UAS system was used [28, 29], as well as a strong maternal V32 driver in combination with dGCC88, dGolgin97 and dGCC185 RNAi lines to analyze the cuticle in the knocked-down embryos. The cuticle of two weak alleles of bcd, bcd103–18-5 (Fig. 2b) and bcd245–35-7 (Fig. 2c) , respectively, were used as controls. In both bcd alleles, abdominal segments 4 and 5 were fused (A4–5) and head defects were observed. bcd245–35-7 proved to be the stronger allele than bcd103–18-5 and in addition showed fusion of A2 and A3 and more pronounced head defects. In addition, a deletion of thoracic segments 1 and 2 (T1, T2) was also observed.
The defects caused by the knock-down of the trans-Golgins varied slightly, but were similar to bcd103–18-5 and bcd245–35-7. In dGCC88i mutants, a fusion of A3-A5 was observed (Fig. 2d), accompanied with head defects and complete deletion of T1. In dGolgin97i mutants, pairwise fusion of abdominal segments A2–3 and A4–5 were observed (Fig. 2e). Finally, in dGCC185i mutants, a fusion of A3–5 was observed, but the head region and the thoracic segments did not show any overt phenotype.
Given the importance of dGCC185 as part of an aMTOC in vertebrates, we sought to establish a ”classical” mutant stock. Since the only available “classical” mutant, dGCC185c03845 harbors a 2nd lethal hit on chromosome 3, we balanced the mutation with a deficiency, Df(3R)08155 spanning the entire dGCC185 locus that allowed the establishment of a viable stock, dGCC185c03845/Df(3R)08155, with weak embryonic lethality. dGCC185c03845 is a P-element insertion strain causing a deletion the last 67 aa of dGCC185, thereby removing two thirds of the GRIP domain  that allows recruitment of dGCC185 to the trans-Golgi network. Lethal dGCC185c03845/Df(3R)08155 embryos displayed a fairly normal cuticle, however, T2 was lacking, the mouth hooks were placed dorsally and the germband was not fully retracted, forcing the embryo into a slightly curved shape (Fig. 2g). In more severe phenotypes (Fig. 2h), the germband showed very little retraction resulting in a complete curved shape. However, this class of mutants revealed similar head and thoracic defects as in the milder mutant phenotype.
In our next approach, we sought to analyze the effect of trans-Golgi genes by monitoring the bcd mRNA pattern. We used fluorescent-in-situ hybridization (FISH) to analyze the bcd mRNA patterns in knock-down oocytes and embryos. In dGCC88i oocytes, bcd mRNA did not fully localize to the anterior pole (Fig. 3a, b), as in wild-type oocytes (Additional file 1: Figure S1), rather many RNA particles remained localized laterally, demonstrating that the bcd mRNA transport was already compromised in the oocyte. This result suggested that Golgi structures must reside in the growing oocyte, consistent with the fact that dGCC88 is maternally transcribed . Due to the lateral localization of the bcd mRNA, an unfertilized egg exhibited a short anterior mRNA gradient (Fig. 3c). Interestingly, this gradient did not change during subsequent nuclear cycles (nc), and a nc 11 embryo still showed the initial shape of the mRNA as in an unfertilized embryo (Fig. 3d), demonstrating that bcd mRNA transport in dGCC88 mutants along the cortex was largely inhibited during early development. This suggested that dGCC88 plays a role in bcd mRNA transport in the embryo, as well.
dGolgin97i mutant oocytes also showed incomplete bcd mRNA transport to the anterior (Fig. 3e, f), similar to dGCC88 mutants (Fig. 3a, b), and consistent with maternal dGolgin97 expression . As a result, in the early embryo, the mRNA was also distributed in a short anterior gradient (Fig. 3g) that did not change throughout development (Fig. 3h), again similar to the characteristics displayed in dGCC88 mutants (Fig. 3d).
In dGCC185i oocytes (Fig. 3i, j), the effect on bcd mRNA localization was minimal and the mRNA transport to the anterior end was almost indistinguishable from wild-type (Additional file 1: Figure S1), suggesting that dGCC185 did not have a strong effect on mRNA localization in oocytes. In embryos (Fig. 3k, l), the effect on mRNA transport was subtle and the gradients appeared normal, suggesting that dGCC185 did not have a strong effect on mRNA localization in embryos as well.
In early dGCC185c03845/Df(3R)08155 nc embryos, the localization of the bcd mRNA was indistinguishable from that of wild-type embryos (data not shown), as evident from nc 11 embryos (Fig. 3m, n). The only overt phenotype occurred during nc 14 at a time point when the bcd mRNA is transported from the basal to the apical side, followed by rapid degradation after 16 min after the onset of nc 14, (nc14 + 16 min; . We observed a substantial delay in bcd mRNA degradation in a dGCC185c03845/Df(3R)08155 mutant embryo, exemplified by an embryo where no mRNA degradation has yet occurred (nc 14 + 16 min; Fig. 3o, p). In comparison, in an identically-staged wild-type embryo, the mRNA was already degraded and was no longer visible . The mRNA was still visible on the apical side of nc14 + 25 min-old embryos (Fig. 3q, r) and degradation was completed in nc14 + 35 min old embryos only (Fig. 3s, t). This corresponded to about 20 min more longevity compared to wild-type, suggesting that dGCC185 was either directly involved in basal-apical transport, or that dGCC185 provided a temporal signal when the basal-apical transport should be initiated. We note that these phenotypes are subtle, most likely due to the fact that the mutation is hypomorphic.
trans-Golgins exert their function in concert with other trans-Golgins, linked via the C-terminal coiled-coil region GRIP . Hence, it was presumed that the knock-down of one member may not lead to complete loss-of-function of the whole assembly, rather it would be weakened. We sought to analyze the effect of these proteins in a double-mutant background by recombining two single RNAi lines together to produce a double mutant dGCC88i; dGCC185i RNAi line. In these double mutants, the mRNA is not transported to the anterior side, rather it stays entirely at the lateral portion (Fig. 4a, b). This data clearly demonstrated an additive effect and consequently a more severe phenotype compared to a single mutation alone (Fig. 3a-b, i-j). As a consequence of this lateral localization in oocytes, transcripts were found in a broad gradient in early embryos (Fig. 4c, d), which extended even more at nc 13 (Fig. 4e, f) and finally peaking during nc 14 (Fig. 4g, h) where transcripts were transported up to the middle of the embryo and thus much farther than in wild-type embryos [9, 10]. Moreover, bcd transcripts lingered slightly longer comparable to those of a nc 14 wild-type embryo and were still readily visible apically at nc 14 + 16 min, (Fig. 4g, h). However, they did not persist as long as in seen in the “classical” dGCC185 mutant (Fig. 3s, t).
Effect of trans-Golgins on bcd downstream targets
Since the cuticles of the trans-Golgins mutants exhibited various defects related to bcd, targets downstream of the segmentation gene hierarchy such as the gap gene empty spiracles (ems) and the pair-rule gene even-skipped (eve) were chosen to monitor the activity of bcd, based on their altered expression patterns (Fig. 5a-d). We compared the position of the stripes of RNAi-mediated mutant embryos along the A-P axis to those of wild-type embryos through t-test analysis (Tables 1, 2; Additional file 2: Figure S2). Interestingly, only dGCC88 RNAi embryos resulted in a significant difference in the stripe pattern (Fig. 5e-h, Additional file 2: Figure S2). In dGCC88i embryos, Eve stripes 2 (0.01 < P < 0.05), 3 (P < 0.01), 4 (P < 0.01), 5 (P < 0.01), 6 (0.01 < P < 0.05), and 7 (P < 0.01) shifted towards the posterior significantly (Fig. 5g, arrowheads, Additional file 2: Figure S2). Eve stripe 1 (P > 0.05) and Ems (P > 0.05) was an exception (Additional file 2: Figure S2). Surprisingly, the other trans-Golgi genes, in particular dGCC185 did not behave as expected and did not show any statistically significant change (Additional file 2: Figure S2). To rule out variations in the expression levels of the transgenes in the RNAi lines, two different lines of dGCC185i were tested, one with an insertion on the 2nd chromosome, termed II, and another on the 3rd chromosome, termed III. In the dGCC185i II line, the shift of patterns of Ems and Eve was not statistically different from that of a wild-type embryo (P > 0.05) (Additional file 2: Figure S2). In the dGCC185i III line, however, although only Eve stripe 1 showed a significant shift (0.01 < P < 0.05; Fig. 5k, arrowhead), it was towards the anterior (Additional file 2: Figure S2). Considering the importance of dGCC185 for the trans-Golgi network, it was reasoned that the maternal driver V32 was too weak a driver to mediate sufficient down-regulation of dGCC185. For this reason, a triple maternal driver (MTD, the strongest maternal driver available in the stock centers), was used in combination with dGCC185 III. Surprisingly, the results did not show a significant difference compared to the V32 driver (data not shown). However, when embryos from the dGCC185c03845/Df(3R)08155 mutant combination were analyzed, Ems (0.05 < P < 0.01), Eve stripes 1 (P < 0.01), 2 (P < 0.01) and 3 (0.01 < P < 0.05) showed a posterior shift (Fig. 5n, o, arrowheads; Additional file 2: Figure S2).
In contrast to the other trans-Golgi proteins, dGolgin97i revealed a mild posteriorward shift of Eve stripes 3 (P < 0.01), 4 and 5 (0.01 < P < 0.05) (Fig. 6g, arrowheads; Additional file 2: Figure S2). Interestingly, in dGolgin97 mutant embryos, the nuclei covering the anterior 60% of the embryo were at an advanced stage compared to those of the posterior 40% (Fig. 4e, insert) suggesting that dGolgin97 affects the maturation of the nuclei during nc 14 in a spatial manner. Consequently, the formation of stripes 5–7 was delayed and the stripe pattern was not resolved yet (Fig. 6g, arrow).
Our study provides evidence that the simple SDD diffusion model proposed more than 3 decades ago by  needs to be revised in order to explain the movement of Bcd for gradient formation . Our data demonstrates that the bcd mRNA gradient is the template for the Bcd protein gradient, also termed the ARTS model [9, 10].
Our previous analysis revealed that MT threads at the anterior pole is a prerequisite for the ARTS model and bcd mRNA transport . Attempts to localize the minus- or plus end-binding proteins on the cortical MT threads failed, possibly because there is no “conventional” microtubule organization center (MTOC) at the cortex, or because the harsh fixation conditions led to denaturation of the antigens and thus prevented the detection using the panel of antibodies that were available. The only protein that showed co-localization with the cortical MTs was Chromosome bows (Chb), also named CLASP/MAST/Orbit [21, 35], a plus end-binding protein, which decorated the MTs in a patchy manner (Fig. 1). Recent studies showed that by using a CLASP-dependent nucleation at the trans-Golgi network, asymmetric MTs could be nucleated in a centrosome-independent way, originating from an aMTOC .
Considering the role of the trans-Golgins as an aMTOC, we reasoned that early cortical Golgi structures could help to initiate and organize cortical MTs (Fig. 1a, d). Little is known about the presence of cortical Golgi structures during early nuclear cycles . The only description of Golgi structures in the early embryonic cortex was published by . This work demonstrated that Golgi structures were not only associated with dividing nuclei in the interior of embryo, but they were also found at the cortex. The same report also described Golgi-like structures at the cortex of growing oocytes, suggesting that these structures are already built up maternally, consistent with our data on the effect on down-regulating trans-Golgins in oocytes (Fig. 3). Another report showed the presence of punctate wheat germ agglutinin (WGA)-positive structures to denote trans-Golgi structures at the cortex of early nc embryos . A similar punctate cortical staining is indeed observed when staining early nc embryos for the presence of the coatomer Golgi marker β-COP (data not shown). The data demonstrates that Golgi-like structures do exist, at the cortex of early nc embryos, but more research is needed to elucidate origin and nature of these structures.
In 2007, it was reported that members of the ESCRT-II endosomal sorting complex had profound effects on bcd mRNA localization in the oocyte , similar to the effect seen in the dGCC88i; dGCC185i double mutant. The key proteins of the ESCRT-II complex, VPS22, VPS25 and VPS36 all showed an effect on bcd mRNA localization during oogenesis, while only VPS36 showed physical binding to the 3’UTR of bcd . While the mechanisms underlying bcd localization in oocytes are clearly different from those proposed to occur with the trans-Golgins, it suggests that several elements of the secretory pathway can have an effect on bcd localization.
dGCC185, as the only member of the 4 trans-Golgins reported to be involved in MTs nucleation did not show any significant shift of the Eve stripes. In contrast, dGCC88 showed the most significant shift of the Eve stripes. As discussed by , even under conditions where GCC185 function is compromised and the CLASPs lose their association with the Golgi stacks, it does not affect displaced CLASPs for stabilization of pre-existing MTs seeds and to promote their growth. In fact, there could be other trans-Golgins that compensate for the loss of a particular Golgin. For example, the deletion of either GMAP210 or GM130, two cis-Golgi resident proteins exhibiting similar phenotypes suggests that the two Golgins function in similar pathways [40, 41]. In particular, the latter, GMAP210 possesses a MT-minus-end binding activity , making it another prime candidate for Golgi-mediated MT-binding. As far as nucleation of MTs is concerned, according to our results, dGCC88 would constitute the most important player where most of the bcd signal is relayed, as it showed the strongest shift of the Eve stripes (Fig. 5g, Table 1) and changes in the cuticle (Fig. 2d). Thus, to address the question as to the compensation of function between Golgins and the fact that all Golgins bind small G-proteins via their GRIP domains to exert their functions, we subjected two G-proteins, Rab6 and Arl1 (Arf-like1) to the same analysis as the Golgins (data not shown). Rab6 belongs to the Rab family of small G-proteins, and is located to the trans-Golgi compartment to recruit Golgins and enable membrane trafficking . Arl1 is the small G-protein Arf-like1 and is also located on the Golgi complex to recruit Golgins . Again, no significant shift of the Eve stripes was seen in rab6 and arl1 mutants (data not shown).  pointed out that in mammals, it is still a conundrum that Arl1 is able to bind the GRIP domain of GCC185, and questionable whether an interaction with Rab6 is essential for Golgi function. Even if the relationship between G-proteins and trans-Golgi proteins is an important one, the interaction may not be exclusive, suggesting that a single Golgin may not carry a specific function, but rather work together with other Golgins at the trans-Golgi surface. In a situation where a partial-loss of either rab6 or arl1 is achieved, the four trans-Golgins would still not lose their association with the Golgi structure completely. This was demonstrated by , showing that loss of arl1 function leads to mislocalization of dGCC88, dGolgin97 and dGolgin245, but not of dGCC185.
The study by  identified that a maternal effect comes into play to account for the variability of the developmental time of the embryo. Given the nuclear density differences in dGolgin97i mutants at 0–60% egg length (Fig. 6e), we hypothesize that apart from shifts of the Eve and Ems stripes in trans-Golgins mutants, the variance of the developmental time could be an option for alterations seen in bcd signaling as well.
Interestingly, none of the trans-Golgin mutations showed 100% identical cuticle defects inherent with the two weak bcd alleles (Fig. 2b, c). Always in common was a fusion of A4 to A5, to a lesser extent also between A2 to A3 (Fig. 2d-f) and head defects (Fig. 2d, e). Of the trans-Golgins, dGCC88i embryos showed the most severe cuticle defects, also documented by the strongest variation in the shift of the Eve stripes (Fig. 5, Additional file 2: Figure S2). This suggests distinct requirements for function or assembly of the trans-Golgi network, or for localization of the bcd transcripts in the oocyte. The fact that none of the mutants showed mRNA transportation activity in the embryo suggests that the RNAi approach compromised all maternal contribution of the trans-Golgins and thus prevented any trans-Golgin activity in the embryo.
As far as the “classical” dGCC185 mutant and its particular phenotype is concerned (Fig. 2g, h), only the head defects and absence of T2 were reminiscent of the weak bcd phenotype. The P-element insertion leads to a deletion of the last 67 aa leading and thus to a partial deletion of the GRIP domain which confers binding to Arl1 to mediate Golgi recruitment . In this COOH-terminal-truncated dGCC185 protein, the vast majority of the coiled-coil part is still intact and projects, in concert with the other trans-Golgins-like tentacles into the cytoplasm. It is therefore not surprising that the cuticle phenotype is rather mild and not fully reminiscent of the other trans-Golgin RNAi mutant lines. Moreover, bcd mRNA localization in oocytes and embryos was indistinguishable from that of wild-type (Fig. 3m, n, Additional file 1: Figure S1), except for the transcripts being more persistent during nc 14 (Fig. 3o-t). Here, dGCC185 could provide a function for the basal-apical transport of the mRNA, as this one is mediated by MTs. Hence, the truncated dGCC185 protein could lower the activity of this transport and thus delay the degradation of the mRNA on the apical side.
The majority of the trans-Golgin lines did not show a significant shift of the gap gene Ems, which could be explained by the results from the study of . Their assay on genome-wide measurement of spatial expression in patterning mutants of Drosophila implied that only several key transcription factors would show significant expression pattern changes in bcd mutants. This could mean that even though the expression of Ems is bcd-dependent, Ems is not a key transcription factor during the earlier stage. Thus, without a sufficient change in the activity of Bcd, Ems will not respond substantially, particularly taking into account that the concentrations of Bcd at the position where Ems is expressed are still rather high. Hence, the position where Ems is expressed is less sensitive to fluctuations in Bcd levels.
Our data provides evidence that, apart from the ESCRT II system, another element of the secretory pathway, i.e. that of the Golgi system, plays a pivotal role in bcd mRNA localization. This calls into question this simplistic model of how the bcd gradient is established and may suggest that bcd gradient formation might be dependent on far more components than previously anticipated, a notion that should be taken into consideration when working with this paradigm for gradient formation.
Materials and methods
Drosophila stocks and genetics
Canton-S stock from Bloomington (No. 64349) was used as a control. The maternal GAL4-driver line V32 was obtained from Perrimon lab. All of the UAS fly strains were obtained from the Bloomington or Vienna Drosophila Stock Centers. A viable stock of dGCC185c03845 in trans to Df(3R)08155 was utilized to generate embryos with a COOH terminal deletion (the last 67 aa) in dGCC185.
Flies were fed with standard fly food (Bloomington recipe) and were maintained at either 25°C or 29°C, depending on the efficacy of the maternal driver system.
Embryo fixation for cortical MTs network staining
Embryos in Fig. 1 were fixed at high concentrations of formaldehyde (> 25%), as described in .
Embryos were collected in 24 h. intervals, incubated > 36 h., dechorionated in 50% bleaching solution, fixed in 25% formaldehyde for > 5 h., devitellinized, mounted in Hoyer’s and incubated at 65°C for 3–5 days, as described .
Antibody staining and fluorescent in situ hybridization
The working concentration for mab YL1, 2 against tyrosinated tubulin (Thermo Fisher Scientific) was at 1:2000. The rabbit polyclonal antibody against Chb was obtained from Claudio Sunkel and was used at 1:500. The monoclonal antibody 2B8 against Eve (DSHB) was used at 1:250. Rabbit-anti-Ems antibodies were obtained from Uwe Walldorf and were used at 1:1000. DAPI for nuclear staining was used at 1:1000 from a 1 mg/ml stock.
The protocol for fluorescent in situ hybridization was adopted from , with the exception that RNA probes were tagged with an Alexa Fluor 568 Signal-Amplification Kit (Invitrogen A11066).
All images were recorded using a Zeiss LSM 710 confocal microscope. Images were post-processed with Adobe Photoshop and Adobe Illustrator. Image J was used to measure the length of the embryos, the distance between the anterior tip, the anterior border of each eve stripe and the posterior border of ems. All data was analyzed with Analysis of Variance (ANOVA) and two-tailed Student’s t-tests. Data are reported as means ± SE.
Availability of data and materials
The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request.
Acentriolar microtubule organizing center
Active mRNA transport, synthesis
Synthesis, diffusion, degradation
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S. B. thanks the Swedish Research Council, the Ekhaga, Fysiografen, Pia Ståhl and Erik Philip-Sörensen Stiftelse for support. S. B. wishes to thanks Thomas U. Mayer for hosting him during a sabbatical stay in 2018 and subsequent years. We wish to thank Claudio Sunkel for providing the Chb antibody, Uwe Walldorf for the Ems antibody, and Linda Wei and Thomas Blom for comments on the manuscript.
Swedish Research Council, award number 2010–4358
Erik Philip-Sörensen Foundation
Nilsson Ehle Foundation
Pia Ståhl Foundation
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Additional file 1:
Figure S1. bcd mRNA expression in wild-type embryos. bcd expression pattern in wild-type oocytes, as assayed by fluorescent in situ hybridization. (A) bcd mRNA pattern as a single signal in red, (B) merge of the mRNA signal (red) with that of the DAPI channel (blue) denoting the nuclei. (JPG 220 kb)
Additional file 2:
Figure S2. Statistic analysis of the shifts of the stripes of Even-skipped (Eve) and Empty spiracles (Ems) in trans-Golgin mutants. i: RNAi. ※ 0.05 < P < 0.01; ※※ P < 0.01. The error bars indicate standard deviation. (JPG 1101 kb)
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Cai, X., Fahmy, K. & Baumgartner, S. bicoid RNA localization requires the trans-Golgi network. Hereditas 156, 30 (2019). https://doi.org/10.1186/s41065-019-0106-8