Table 1 An overview of the primary R packages utilized in this study and the functions they implement
R package | Versions | Function |
|---|---|---|
sva | 3.44.0 | Batch correction |
limma | 3.52.1 | Differential expression analysis |
glmnet | 4.1−4 | LASSO analysis |
randomForest | 4.7–1.1 | RF algorithm |
caret | 6.0–92 | SVM-RFE algorithm |
venn | 1.11 | Taking the intersection |
rms | 6.3−0 | Constructing a nomogram model |
ConsensusClusterPlus | 1.60.0 | Unsupervised clustering analysis |
ggplot2 | 3.4.1 | Drawings |
clusterProfiler | 4.6.1 | Enrichment analysis |
GSVA | 1.44.2 | Gene Set Variation Analysis |