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Table 1 Binding affinity and residues in hydrogen bonds to B12 and ATP ligands

From: Identifying and predicting the pathogenic effects of a novel variant inducing severe early onset MMA: a bioinformatics approach

Proteins

ΔGnoelec

(Kcal/ mol)

Residues in H-bond

ΔGnoelec

(Kcal/ mol)

Residues in H-bond

ΔGnoelec

(Kcal/ mol)

Residues in H-bond

B12-302

B12-303

ATP

MMAB

-8.1

R186 (A), R218 (A), Q122 (C), S126 (C)

-8.1

Q122 (A), S126 (A), I171 (B), R186 (B)

-5.7

T60 (B), K61 (B), G63 (B), S68 (B), K78 (B), R190 (C), E193 (C), R194 (C), N214 (C)

MMAB-R186Q

-8.2

R218 (A), Q122 (C), S126 (C)

-8.3

Q122 (A), S126 (A), I171 (B)

-5.6

K61 (B), T62 (B), G63 (B), S68 (B), S69 (B), K78 (B), R190 (C), E193 (C), R194 (C)

MMAB-R186W

-8.2

W186 (A), R218 (A), Q122 (C), S126 (C)

-8.6

Q122 (A), S126 (A), I171 (B)

-5.6

T60 (B), K61 (B), T62 (B), G63 (B), S68(B), S69 (B), K78 (B), R190 (C), E193 (C), R194 (C), N214 (C)