Description | Gene markers | HNSC | |||
---|---|---|---|---|---|
None | Purity | ||||
Cor | p | Cor | p | ||
CD8+ T cell | CD8A | 0.896 | 9.19e-186*** | 0.887 | 1.58e-166*** |
CD8B | 0.846 | 5.64e-144*** | 0.832 | 2e-127*** | |
T cell | CD3D | 0.87 | 1.71e-161*** | 0.859 | 2.3e-144*** |
CD3E | 0.939 | 1.51e-242*** | 0.933 | 5.57e-220*** | |
CD2 | 0.938 | 4.26e-242*** | 0.932 | 1.49e-217*** | |
B cell | CD19 | 0.588 | 6.64e-50*** | 0.558 | 1.52e-41*** |
CD79A | 0.582 | 1.26e-48*** | 0.553 | 8.95e-41*** | |
Monocyte | CD86 | 0.772 | 2.16e-104*** | 0.749 | 1.37e-89*** |
CD115 (CSF1R) | 0.841 | 7.1e-141*** | 0.828 | 2.87e-125*** | |
TAM | CCL2 | 0.587 | 1e-49*** | 0.553 | 1.01e-40*** |
CD68 | 0.473 | 1.85e-30*** | 0.457 | 9.69e-27*** | |
IL10 | 0.618 | 2.29e-56*** | 0.58 | 1.28e-45*** | |
M1 Macrophage | INOS (NOS2) | 0.314 | 1.99e-13*** | 0.341 | 7.91e-15*** |
IRF5 | 0.358 | 3.2e-17*** | 0.378 | 3.71e-18*** | |
COX2(PTGS2) | −0.147 | 7.7e-04*** | −0.132 | 3.4e-03*** | |
M2 Macrophage | CD163 | 0.71 | 3.84e-81*** | 0.701 | 8.05e-74*** |
VSIG4 | 0.642 | 4.64e-62*** | 0.638 | 1.43e-57*** | |
MS4A4A | 0.746 | 5.93e-94*** | 0.73 | 3.89e-83*** | |
Neutrophils | CD66b (CEACAM8) | 0.075 | 8.81e-02 | 0.059 | 1.9e-01 |
CD11b (ITGAM) | 0.633 | 9.83e-60*** | 0.614 | 2.08e-52*** | |
CCR7 | 0.749 | 3.41e-95*** | 0.726 | 1.37e-81*** | |
Natural killer cell | KIR2DL1 | 0.398 | 2.86e-21*** | 0.4 | 2.39e-20*** |
KIR2DL3 | 0.555 | 1.38e-43*** | 0.549 | 4.7e-40*** | |
KIR2DL4 | 0.639 | 2.37e-61*** | 0.639 | 7.05e-58*** | |
KIR3DL1 | 0.509 | 9.34e-36*** | 0.508 | 1.16e-33*** | |
KIR3DL2 | 0.651 | 2.58e-64*** | 0.644 | 5.71e-59*** | |
KIR3DL3 | 0.261 | 1.52e-09*** | 0.253 | 1.33e-08*** | |
KIR2DS4 | 0.409 | 1.85e-22*** | 0.386 | 6.8e-19*** | |
Dendritic cell | HLA-DPB1 | 0.862 | 2.47e-155*** | 0.848 | 4.71e-137*** |
HLA-DQB1 | 0.698 | 2.36e-77*** | 0.678 | 1.42e-67*** | |
HLA-DRA | 0.858 | 1.69e-152*** | 0.844 | 2.04e-134*** | |
HLA-DPA1 | 0.864 | 7.54e-157*** | 0.851 | 5.61e-139*** | |
BDCA-1(CD1C) | 0.54 | 7.3e-41*** | 0.489 | 6.57e-31*** | |
BDCA-4(NRP1) | 0.431 | 4.4e-25*** | 0.415 | 6.67e-22*** | |
CD11c (ITGAX) | 0.696 | 6.05e-77*** | 0.674 | 2.02e-66*** | |
Th1 | T -bet (TBX21) | 0.896 | 5.71e-185*** | 0.888 | 2.99e-167*** |
STAT4 | 0.681 | 1.74e-72*** | 0.652 | 7.99e-61*** | |
STAT1 | 0.623 | 1.97e-57*** | 0.605 | 1.95e-50*** | |
IFN-γ (IFNG) | 0.759 | 4.45e-99*** | 0.743 | 2.28e-87*** | |
TNF-α (TNF) | 0.227 | 1.62e-07*** | 0.2 | 7.51e-06*** | |
Th2 | GATA3 | 0.472 | 2.81e-30*** | 0.431 | 1.19e-23*** |
STAT6 | 0.323 | 3.55e-14*** | 0.371 | 1.87e-17*** | |
STAT5A | 0.661 | 9.69e-67*** | 0.654 | 2.84e-61*** | |
IL13 | 0.481 | 1.47e-31*** | 0.456 | 1.09e-26*** | |
Tfh | BCL6 | 0.122 | 5.09e-03 | 0.185 | 3.61e-05*** |
IL21 | 0.572 | 1.24e-46*** | 0.545 | 1.82e-39*** | |
Th17 | STAT3 | 0.395 | 6.09e-21*** | 0.399 | 2.85e-20*** |
IL17A | 0.362 | 1.23e-17*** | 0.337 | 1.5e-14*** | |
Treg | FOXP3 | 0.853 | 9.12e-149*** | 0.839 | 1.05e-131*** |
CCR8 | 0.752 | 4.31e-96*** | 0.728 | 1.89e-82*** | |
STAT5B | 0.431 | 5.72e-25*** | 0.43 | 1.43e-23*** | |
TGFβ (TGFB1) | −0.012 | 7.89e-01 | −0.028 | 5.42e-01 | |
T cell exhaustion | PD-1 (PDCD1) | 0.895 | 4.3e-184*** | 0.887 | 9.24e-167*** |
PDL1(PDCD1LG2) | 0.593 | 6.31e-51*** | 0.567 | 3.74e-43*** | |
CTLA4 | 0.823 | 1.06e-129*** | 0.808 | 1.07e-114*** | |
LAG3 | 0.817 | 2.22e-126*** | 0.807 | 2.88e-114*** | |
TIM-3 (HAVCR2) | 0.879 | 2.91e-169*** | 0.873 | 6.53e-155*** | |
GZMB | 0.776 | 3.73e-106*** | 0.759 | 2.31e-93*** |