Table 2 FAIRE Peaks Matched Across Aedes Genome Versions. We compiled a list of 16 AaegL3 peaks experimentally validated to have enhancer-like properties using transgenic reporter assays from Behura, et al. [3] and Mysore, et al. [21]. AaegL3 peaks were matched to corresponding AaegL5 peaks using PeakMatcher by finding sequencing reads overlapping both pairs of peaks. Each match peaked was further validated by comparing the local genes in the AaegL3 and AaegL5 assemblies

supercont1.2641:1068–1902

2:112926534–112,928,916

Yes

supercont1.381:720103–720,682

2:112926534–112,928,916

Yes

supercont1.551:501192–503,018

3:315077384–315,078,301,

1:3572116–3,573,959

Yes (chromosome 1 peak)

supercont1.174:341062–341,799

No match

supercont1.237:1279560–1,280,173

3:305593808–305,594,529

Yes

supercont1.16:273854–274,851

3:246347420–246,348,664

Yes

supercont1.160:604315–605,761

1:150742156–150,743,754

Yes

supercont1.440:550819–551,917

1:310314461–310,315,597

Yes

supercont1.128:2089446–2,090,042

2:377442633–377,443,669

Yes

supercont1.911:297903–298,590

2:22088421–22,089,581

No (hex2)

supercont1.635:654750–655,775

2:190755244–190,756,471

Yes

supercont1.1782:38974–39,907

No match

supercont1.671:130269–131,236

3:53452438–53,454,623

Yes

supercont1.199:700946–702,158

1:121501670–121,502,551

Yes

supercont1.54:975577–976,601

3:368086709–368,088,017

No (onecut)

supercont1.123:863985–864,746

1:220758917–220,759,600

Yes