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Table 3 KEGG pathway of up-regulated and down-regulated DEGs

From: Identification of differentially expressed genes, signaling pathways and immune infiltration in rheumatoid arthritis by integrated bioinformatics analysis

ID

Description

Adjusted

P-values

Gene symbol

Count

Up-regulated

 hsa04062

Chemokine signaling pathway

1.90E-14

CXCL9/CXCL10/CCL18/CXCL6/CCL5/CCR5/STAT1/CCR2/ITK/PRKCB/NCF1/CXCL13/RAC2/CCR7/CXCL5/CXCL11/CXCR4/CCL13/ADCY7/CXCR6/CXCR3/DOCK2/PRKCZ/XCL1/JAK2/PRKACB/PIK3CG/CCR1/WAS/VAV1/CXCL1/PIK3CD/HCK/CX3CR1/CCL19/CCL7/CXCR5/ARRB2/GNAI2/STAT2/CCR6/FGR/PRKCD

43

 hsa04640

Hematopoietic cell lineage

8.51E-13

HLA-DOB/MS4A1/IL7R/ITGA4/CD38/CD2/CD8A/CD3D/HLA-DMB/CSF1R/CD19/3ADCY7/HLA-DMA/CD3E/HLA-DPB1/CD37/HLA-DQB1/CR1/HLA-DRA/CD14/CD4/IL2RA/CSF3R/FLT3LG/CD1B/CD24/CD3G/CD7/CSF2RA

29

 hsa04060

Cytokine-cytokine receptor interaction

4.76E-12

TNFRSF17/CXCL9/CD27/CXCL10/IL21R/CCL18/TNFSF11/CXCL6/CCL5/IL7R/IL2RG/CCR5/IL32/CCR2/CSF2RB/CXCL13/CSF1R/CCR7/IL15/CXCL5/IL23A/CXCL11/CXCR4/CCL13/CXCR6/CXCR3/TNFSF10/LTB/XCL1/IL27RA/TNFRSF4/CD4/CCR1/IL10RA/CXCL1/IL2RA/CSF3R/IL15RA/CX3CR1/FAS/IL18/CCL19/IFNA21/CD40LG/CCL7/TNFSF13/IL1RL1/CXCR5/CSF2RA/CCR6

50

 hsa04061

Viral protein interaction with cytokine and cytokine receptor

6.00E-12

CXCL9/CXCL10/CCL18/CXCL6/CCL5/IL2RG/CCR5/CCR2/CXCL13/CSF1R/CCR7/CXCL5/CXCL11/CXCR4/CCL13/CXCR3/TNFSF10/XCL1/CCR1/IL10RA/CXCL1/IL2RA/CX3CR1/IL18/CCL19/CCL7/CXCR5/CCR6

28

 hsa05340

Primary immunodeficiency

7.15E-11

CD79A/LCK/BLNK/IL7R/IL2RG/PTPRC/CD8A/CD3D/CD19/CD3E/TAP1/RFX5/ZAP70/CD4/ICOS/IGLL1/CD40LG

17

 hsa05140

Leishmaniasis

1.16E-10

HLA-DOB/ITGA4/STAT1/HLA-DMB/PRKCB/NCF1/ITGB2/3ADCY7/HLA-DMA/HLA-DPB1/CYBA/CYBB/CD1B3/HLA-DQB1/CR1/HLA-DRA/PTPN6/FCGR3B/JAK2/MARCKSL1/NCF2/MAPK13/NCF4

23

 hsa04380

Osteoclast differentiation

4.24E-10

TNFSF11/LCK/BLNK/STAT1/NCF1/CSF1R/FCGR2B/PLCG2/SYK/LILRB2/CYBA/LILRB4/LILRB1/CD1B3/LILRB3/FCGR3B/SIRPG/LILRA3/LCP2/PIK3CD/NCF2/MAPK13/NCF4/TREM2/TYROBP/ACP5/7CD3E8/STAT2/SPI1

29

 hsa05323

Rheumatoid arthritis

1.27E-09

MMP1/HLA-DOB/TNFSF11/CXCL6/CCL5/HLA-DMB/MMP3/ITGB2/ITGAL/3ADCY7/IL15/HLA-DMA/CXCL5/IL23A/HLA-DPB1/CD86/HLA-DQB1/LTB/HLA-DRA/CXCL1/CTLA4/IL18/TNFSF13/ACP5

24

Down-regulated

 hsa03320

PPAR signaling pathway

0.000189284

PLIN1/PCK1/ADIPOQ/ACADL/FABP4/LPL

6

 hsa04923

Regulation of lipolysis in adipocytes

0.000398572

PLIN1/ADCY2/NPY1R/FABP4/PTGS2

5

 hsa04920

Adipocytokine signaling pathway

0.000818815

ADCY291/PCK1/LEP/ADIPOQ/ACACB

5

 hsa04922

Glucagon signaling pathway

0.004887657

ADCY2/ADCY291/PHKA1/PCK1/ACACB

5

 hsa04152

AMPK signaling pathway

0.006451484

ADCY291/PCK1/LEP/ADIPOQ/ACACB

5

 hsa04020

Calcium signaling pathway

0.006451484

ADCY2/PHKA1/EDNRB/PLN/TNNC2/AGTR1

6

 hsa04918

Thyroid hormone synthesis

0.008113772

ADCY2/ATP1A2/DUOX2/GPX3

4

 hsa04371

Apelin signaling pathway

0.008113772

PLIN1/ADCY2/ADCY291/23710/AGTR1

5

 hsa04022

cGMP-PKG signaling pathway

0.016012172

ADCY2/EDNRB/ATP1A2/PLN/AGTR1

5

 hsa04925

Aldosterone synthesis and secretion

0.016012172

ADCY2/ATP1A2/KCNK3/AGTR1

4

  1. KEGG Kyoto Encyclopedia of Genes and Genomes, DEGs differentially expressed genes