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Table 3 Distribution of SSR types in the transcriptome of Helianthus tuberosus L

From: Characterization of the Tibet plateau Jerusalem artichoke (Helianthus tuberosus L.) transcriptome by de novo assembly to discover genes associated with fructan synthesis and SSR analysis

Repeat number

Motif type

Total

Ratio (%)

Di-

Tri-

Tetra-

Penta-

Hexa-

4

0

0

360

135

111

606

9.13

5

0

1736

92

27

32

1887

28.44

6

1301

732

22

2

2

2059

31.03

7

733

247

10

3

2

995

14.99

8

456

41

2

2

3

504

7.59

9

256

16

0

0

1

273

4.11

> 9

256

50

3

0

2

311

4.69

Total

3002

2822

489

169

153

6635

 

Proportion%

45.24

42.53

7.37

2.55

2.31

 

100.00