Skip to main content

Table 5 Linkage analysis of Psc

From: Construction of a high-density genetic map: genotyping by sequencing (GBS) to map purple seed coat color (Psc) in hulless barley

Site name Chra LOD peak Position
(cM)
99% CI (cM)b R2(%)c Additive
effect
Left
markerd
Right
markere
Gene
number
Psc-1 4H 4.81 10.91 10.5–13.8 3.79 0.2779 bin857 bin863 275
Psc-2 7H 10.45 71.81 71–73.1 13.64 −0.376 bin1533 bin1532 57
Psc-3 7H 17.57 77.41 77.3–78.5 17.56 0.443 bin1383 bin1384 60
Psc-4 7H 25.37 84.61 84.5–86 23.86 0.5598 bin1377 bin1372 248
Psc-5 7H 14.34 90.61 90.5–90.7 15.26 −0.3707 bin1370 bin1369 189
  1. aChromosome number
  2. b99% confidence interval for site length
  3. cProportion of phenotypic variation explained by each site
  4. dLeft boundary markers for each site
  5. eRight boundary markers for each site