Fig. 5

Analysis of gene expression of the SWI/SNF subunits by using the online GSCALite resource. A The association between paired mRNA expression and CNV percent samples, based on Person’s product moment correlation coefficient, and follows a t distribution. P-value was adjusted by FDR. B Differential gene expression of the SWI/SNF subunits in paired tumor and normal samples of the TCGA datasets (only 14 cancer types have over ten paired tumor and normal samples were included). The fold change is mean (Tumor) / mean (Normal), p-value was used t-test and p-value was adjusted by FDR. The genes with fold change (FC > 2) and significance (FDR > 0.05) were retained for the figure production. All analyses were performed by using the GSCALite resource (http://bioinfo.life.hust.edu.cn/web/GSCALite/)