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Table 1 Genome, Element, and FAIRE Peak Statistics. We calculated the indicated statistics about the two A. aegypti genome assemblies, gene sets, and FAIRE peaks

From: PeakMatcher facilitates updated Aedes aegypti embryonic cis-regulatory element map

 

AaegL3

(Behura, et. al.)

AaegL5

(Us)

Genome Size

1401 Mb

1295 Mb

Gene Coverage (% of bp)

20.5%

52.4%

Gene Count

15,799

14,677

Gene Width (bp)

18,198 ± 32,107

46,727 ± 107,809

Exon Coverage

2.14%

3.17%

Exon Count

71,853

211,311

Exon Width (bp)

448 + 558

474 + 705

Intron Coverage

18.37%

49.4%

Intron Count

49,069

62,581

Intron Width (bp)

5182 ± 11,530

10,102 ± 27,245

Promoter Coveragea

0.56%

0.57%

Promoter Counta

15,762

14,658

Mapping Rate

 

77.47%

FAIRE Genome Coverage (Mbp)

142.9 Mbp

147.6 Mbp

FAIRE Genome Coverage (%)

10.2%

11.4%

FAIRE Peak Count

121,595

128,307

FAIRE Peak Width

1228 ± 562

1138 ± 562

  1. Notes: aWe removed promoter windows that extended past the end of a scaffold