Fig. 2

PeakMatcher Workflow. PeakMatcher matches each peak in the source genome to one or more corresponding peaks in the target genome. PeakMatcher finds the sequencing reads that overlap each peak and outputs a table of peak and read names. In the second step, sequencing reads aligned to the target genome are identified for overlapping peaks in the target genome. The mappings of read names to peaks are used to match peaks from the source and target genomes. The final many-to-many table of source and target peaks is output to a text file