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Table 2 SNPs and Indels detection

From: Performance comparison of four types of target enrichment baits for exome DNA sequencing

Sequencing QC Metric

IDT

Agilent

Twist

Dynegen

Sample ID

S074_5

9

A298

A1

Percent Selection

48

55

32

63

Percent Duplication

15.09

12.93

10.74

14.7

Estimated Library Size (millions)

5794.4

5863.3

3796.4

7050.5

Count SNP on Target

40,729

41,748

22,964

54,340

Count INDEL on Target

5154

4852

806

6603

SNP concordance to dbsnp138 on Target

99.00%

97.00%

98.00%

97.00%

SNP concordance to NA12878 on Target

90.00%

85.00%

88.00%

87.00%

Sensitivity 2 HET on Target referring dbsnp138

99.00%

95.00%

97.00%

96.00%

Percent A < --->G Count on Target

36.04

35.23

37.15

35.19

Percent C < --->T Count on Target

35.81

35.91

37.40

35.27

Percent INS/INDEL on Target

52.20

50.90

50.00

51.37

Percent INDEL (length = 1) on Target

58.67

61.29

28.78

61.00

Percent INDEL (length < =10) on Target

93.69

94.87

84.24

94.99