Skip to main content

Table 1 Analysis of statistical data RNA-seq of orchardgrass

From: Transcriptome analysis on responses of orchardgrass (Dactylis glomerata L.) leaves to a short term flooding

Samplea

WS_0h_1

WS_0h_2

WS_0h_3

WS_8h_1

WS_8h_2

WS_8h_3

WS_24h_1

WS_24h_2

WS_24h_3

Total readsb

44,643,436

51,100,544

41,539,096

48,916,078

46,175,616

39,333,770

39,625,568

48,857,684

56,545,956

Total mapped (%)c

32,213,341

36,722,643

29,484,126

34,653,721

32,228,040

27,919,523

28,219,174

33,577,514

39,533,008

(72.16%)

(71.86%)

(70.98%)

(70.84%)

(69.79%)

(70.98%)

(71.21%)

(68.73%)

(69.91%)

Multiple mapped (%)d

1,120,609

1,233,315

946,216

1,225,851

1,073,156

899,453

852,050

1,147,239

1,276,249

(2.51%)

(2.41%)

(2.28%)

(2.51%)

(2.32%)

(2.29%)

(2.15%)

(2.35%)

(2.26%)

Uniquely mapped (%)e

31,092,732

35,489,328

28,537,910

33,427,870

31,154,884

27,020,070

27,367,124

32,430,275

38,256,759

(69.65%)

(69.45%)

(68.7%)

(68.34%)

(67.47%)

(68.69%)

(69.06%)

(66.38%)

(67.66%)

Reads map to ‘+’ (%)f

15,563,768

17,748,957

14,279,174

16,684,717

15,561,283

13,493,851

13,693,019

16,209,484

19,136,212

(34.86%)

(34.73%)

(34.38%)

(34.11%)

(33.7%)

(34.31%)

(34.56%)

(33.18%)

(33.84%)

Reads map to ‘-’ (%)g

15,528,964

17,740,371

14,258,736

16,743,153

15,593,601

13,526,219

13,674,105

16,220,791

19,120,547

(34.78%)

(34.72%)

(34.33%)

(34.23%)

(33.77%)

(34.39%)

(34.51%)

(33.2%)

(33.81%)

  1. aWS_0h_1, 2, 3 (flooding treated for 0 h), WS_8h_1, 2, 3 (flooding treated for 8 h), WS_24h_1, 2, 3 (flooding treated for 24 h); bThe amount of RNA-seq sequencing sequence filtered by sequencing data (Clean data);cTotal Mapped Reads and their percentage of clean reads; dMultiple Mapped Reads and their percentage of clean reads; eUniquely Mapped Reads and their percentage of clean reads; f, gSequencing sequence alignment to the total number of positive and negative strands on the genome (Total Mapped Reads) and its percentage of clean reads