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Table 4 Variation genes involved in tannin synthesis

From: Genome-wide variations analysis of sorghum cultivar Hongyingzi for brewing Moutai liquor

Gene nameChromosomeAnnotationVariation typeVariation information
Sobic.001G0126001SbMATENon-synonymous SNP1,175,307 bp, C/A
Sobic.001G1854001SbMATENon-synonymous SNP15,851,598 bp, G/A; 15,851,639 bp, C/T; 15,851,643 bp, G/C; 15,851,644 bp, G/C; 15,857,015 bp, G/A
Non-frameshift insertion15,851,633 bp, −/GGT
Sobic.001G1855001SbMATENon-frameshift insertion15,867,230 bp, −/GCACGG
Sobic.001G1856001SbMATENon-synonymous SNP15,877,514 bp, G/T; 158,77,530 bp, T/A; 15,879,898 bp, T/G
Non-frameshift deletion15,880,626 bp, ACCGGCGCC/−
Sobic.004G3495504SbMATENon-frameshift insertion67,834,717 bp, −/GCTGCT
Sobic.004G3496004SbMATENon-synonymous SNP67,848,132 bp, C/G; 67,848,135 bp, C/G; 67,848,250 bp, T/G
Sobic.007G1655007SbMATENon-synonymous SNP60,025,990 bp, C/A
Sobic.001G3608001SbF3′5′HNon-synonymous SNP65,069,116 bp, T/C
Sobic.001G5439001SbAHA10Non-synonymous SNP80,740,375 bp, C/G
Sobic.003G4364003SbAHA10Non-frameshift insertion73,733,903 bp, −/CCG
Sobic.010G06370010SbAHA10Non-synonymous SNP5,033,142 bp, C/A; 5,033,614 bp, C/T; 5,033,877 bp, C/A; 5,034,044 bp, C/T; 5,034,053 bp, G/C
Frameshift insertion5,032,581 bp, −/GC; 5,032,758 bp, −/GAGC; 5,033,017 bp, −/ATCT
Non-frameshift deletion5,032,669 bp, GTGCTGTTC/−
Non-frameshift insertion5,033,742 bp, −/GGG;
5,034,105 bp, −/TTCCAC
Gain of stop codons5,034,223 bp, −/CTATTTCA
Sobic.010G20780010SbAHA10Non-synonymous SNP55,088,876 bp, A/C
Sobic.002G1175002SbSGTNon-synonymous SNP14,508,960 bp, C/A
Sobic.002G3105002SbCHSNon-synonymous SNP68,442,264 bp, A/C; 68,442,283 bp, G/A
Sobic.004G1790004SbCHSNon-synonymous SNP53,190,344 bp, C/T
Sobic.005G1356005SbCHSNon-synonymous SNP58,503,342 bp, T/A; 58,503,472 bp, T/C; 58,503,507 bp, G/A; 58,503,555 bp, C/G
Sobic.005G1362005SbCHSNon-synonymous SNP58,859,286 bp, C/G
Sobic.005G1363005SbCHSNon-synonymous SNP58,881,162 bp, G/A
Sobic.005G1371005SbCHSNon-synonymous SNP58,943,632 bp, C/T
Sobic.008G0368008SbCHSNon-synonymous SNP3,477,776 bp, G/A
Non-frameshift deletion3,477,795 bp, ACG/−
Sobic.003G2309003SbDFRNon-synonymous SNP57,029,960 bp, C/T
Sobic.003G2310003SbDFRNon-frameshift deletion57,041,941 bp, CTGGGA/−
Sobic.004G0502004SbDFRNon-frameshift deletion4,052,019 bp, AAC/−
Sobic.009G0438009SbDFRNon-synonymous SNP4,149,752 bp, T/C; 4,149,842 bp, G/A; 4,149,896 bp, G/T; 4,149,998 bp, T/C; 4,150,031 bp, C/G
Sobic.004G2009004SbF3′HNon-synonymous SNP55,234,140 bp, T/G
Non-frameshift deletion55,233,739 bp, CGGGAA/−
Sobic.009G1625009SbF3′HNon-synonymous SNP51,944,205 bp, A/G; 51,948,174 bp, C/G
Sobic.004G2360004SbLAC15Non-synonymous SNP58,382,355 bp, G/A; 58,382,419 bp, G/A; 58,383,602 bp, A/G; 28,383,682 bp, G/T
Sobic.004G2361004SbLAC15Non-synonymous SNP58,391,947 bp, C/T
Frameshift deletion58,392,294 bp, CTAC/−
Sobic.005G1567005SbLAC15Non-synonymous SNP62,814,031 bp, G/A; 62,814,043 bp, A/G; 62,814,250 bp. C/G
Non-frameshift deletion62,816,156 bp, CGTCAACGT/−
Frameshift deletion62,813,716 bp, C/−; 62,813,926 bp, A/−; 62,814,183 bp, C/−
Frameshift insertion62,813,832 bp, −/A; 62,814,474 bp, −/TA
Sobic.004G3101004SbFLSNon-synonymous SNP64,699,203 bp, G/A
Sobic.006G2539006SbF3HNon-synonymous SNP59,157,048 bp, A/T; 59,157,274 bp, C/T; 59,158,255 bp, T/A
Sobic.006G2540006SbF3HNon-synonymous SNP59,160,879 bp, A/C; 59,161,461 bp, G/A
Sobic.007G0473007SbOMTNon-synonymous SNP4,721,737 bp, G/C; 4,721,966 bp, C/T; 4,724,116 bp, T/C
Sobic.010G05220010SbOMTNon-synonymous SNP4,072,017 bp, C/G
Sobic.008G0301008SbCHINon-synonymous SNP2,684,008 bp, C/G