From: Genome-wide variations analysis of sorghum cultivar Hongyingzi for brewing Moutai liquor
Gene name | Chromosome | Annotation | Variation type | Variation information |
---|---|---|---|---|
Sobic.001G012600 | 1 | SbMATE | Non-synonymous SNP | 1,175,307 bp, C/A |
Sobic.001G185400 | 1 | SbMATE | Non-synonymous SNP | 15,851,598 bp, G/A; 15,851,639 bp, C/T; 15,851,643 bp, G/C; 15,851,644 bp, G/C; 15,857,015 bp, G/A |
Non-frameshift insertion | 15,851,633 bp, −/GGT | |||
Sobic.001G185500 | 1 | SbMATE | Non-frameshift insertion | 15,867,230 bp, −/GCACGG |
Sobic.001G185600 | 1 | SbMATE | Non-synonymous SNP | 15,877,514 bp, G/T; 158,77,530 bp, T/A; 15,879,898 bp, T/G |
Non-frameshift deletion | 15,880,626 bp, ACCGGCGCC/− | |||
Sobic.004G349550 | 4 | SbMATE | Non-frameshift insertion | 67,834,717 bp, −/GCTGCT |
Sobic.004G349600 | 4 | SbMATE | Non-synonymous SNP | 67,848,132 bp, C/G; 67,848,135 bp, C/G; 67,848,250 bp, T/G |
Sobic.007G165500 | 7 | SbMATE | Non-synonymous SNP | 60,025,990 bp, C/A |
Sobic.001G360800 | 1 | SbF3′5′H | Non-synonymous SNP | 65,069,116 bp, T/C |
Sobic.001G543900 | 1 | SbAHA10 | Non-synonymous SNP | 80,740,375 bp, C/G |
Sobic.003G436400 | 3 | SbAHA10 | Non-frameshift insertion | 73,733,903 bp, −/CCG |
Sobic.010G063700 | 10 | SbAHA10 | Non-synonymous SNP | 5,033,142 bp, C/A; 5,033,614 bp, C/T; 5,033,877 bp, C/A; 5,034,044 bp, C/T; 5,034,053 bp, G/C |
Frameshift insertion | 5,032,581 bp, −/GC; 5,032,758 bp, −/GAGC; 5,033,017 bp, −/ATCT | |||
Non-frameshift deletion | 5,032,669 bp, GTGCTGTTC/− | |||
Non-frameshift insertion | 5,033,742 bp, −/GGG; 5,034,105 bp, −/TTCCAC | |||
Gain of stop codons | 5,034,223 bp, −/CTATTTCA | |||
Sobic.010G207800 | 10 | SbAHA10 | Non-synonymous SNP | 55,088,876 bp, A/C |
Sobic.002G117500 | 2 | SbSGT | Non-synonymous SNP | 14,508,960 bp, C/A |
Sobic.002G310500 | 2 | SbCHS | Non-synonymous SNP | 68,442,264 bp, A/C; 68,442,283 bp, G/A |
Sobic.004G179000 | 4 | SbCHS | Non-synonymous SNP | 53,190,344 bp, C/T |
Sobic.005G135600 | 5 | SbCHS | Non-synonymous SNP | 58,503,342 bp, T/A; 58,503,472 bp, T/C; 58,503,507 bp, G/A; 58,503,555 bp, C/G |
Sobic.005G136200 | 5 | SbCHS | Non-synonymous SNP | 58,859,286 bp, C/G |
Sobic.005G136300 | 5 | SbCHS | Non-synonymous SNP | 58,881,162 bp, G/A |
Sobic.005G137100 | 5 | SbCHS | Non-synonymous SNP | 58,943,632 bp, C/T |
Sobic.008G036800 | 8 | SbCHS | Non-synonymous SNP | 3,477,776 bp, G/A |
Non-frameshift deletion | 3,477,795 bp, ACG/− | |||
Sobic.003G230900 | 3 | SbDFR | Non-synonymous SNP | 57,029,960 bp, C/T |
Sobic.003G231000 | 3 | SbDFR | Non-frameshift deletion | 57,041,941 bp, CTGGGA/− |
Sobic.004G050200 | 4 | SbDFR | Non-frameshift deletion | 4,052,019 bp, AAC/− |
Sobic.009G043800 | 9 | SbDFR | Non-synonymous SNP | 4,149,752 bp, T/C; 4,149,842 bp, G/A; 4,149,896 bp, G/T; 4,149,998 bp, T/C; 4,150,031 bp, C/G |
Sobic.004G200900 | 4 | SbF3′H | Non-synonymous SNP | 55,234,140 bp, T/G |
Non-frameshift deletion | 55,233,739 bp, CGGGAA/− | |||
Sobic.009G162500 | 9 | SbF3′H | Non-synonymous SNP | 51,944,205 bp, A/G; 51,948,174 bp, C/G |
Sobic.004G236000 | 4 | SbLAC15 | Non-synonymous SNP | 58,382,355 bp, G/A; 58,382,419 bp, G/A; 58,383,602 bp, A/G; 28,383,682 bp, G/T |
Sobic.004G236100 | 4 | SbLAC15 | Non-synonymous SNP | 58,391,947 bp, C/T |
Frameshift deletion | 58,392,294 bp, CTAC/− | |||
Sobic.005G156700 | 5 | SbLAC15 | Non-synonymous SNP | 62,814,031 bp, G/A; 62,814,043 bp, A/G; 62,814,250 bp. C/G |
Non-frameshift deletion | 62,816,156 bp, CGTCAACGT/− | |||
Frameshift deletion | 62,813,716 bp, C/−; 62,813,926 bp, A/−; 62,814,183 bp, C/− | |||
Frameshift insertion | 62,813,832 bp, −/A; 62,814,474 bp, −/TA | |||
Sobic.004G310100 | 4 | SbFLS | Non-synonymous SNP | 64,699,203 bp, G/A |
Sobic.006G253900 | 6 | SbF3H | Non-synonymous SNP | 59,157,048 bp, A/T; 59,157,274 bp, C/T; 59,158,255 bp, T/A |
Sobic.006G254000 | 6 | SbF3H | Non-synonymous SNP | 59,160,879 bp, A/C; 59,161,461 bp, G/A |
Sobic.007G047300 | 7 | SbOMT | Non-synonymous SNP | 4,721,737 bp, G/C; 4,721,966 bp, C/T; 4,724,116 bp, T/C |
Sobic.010G052200 | 10 | SbOMT | Non-synonymous SNP | 4,072,017 bp, C/G |
Sobic.008G030100 | 8 | SbCHI | Non-synonymous SNP | 2,684,008 bp, C/G |