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Table 4 Variation genes involved in tannin synthesis

From: Genome-wide variations analysis of sorghum cultivar Hongyingzi for brewing Moutai liquor

Gene name

Chromosome

Annotation

Variation type

Variation information

Sobic.001G012600

1

SbMATE

Non-synonymous SNP

1,175,307 bp, C/A

Sobic.001G185400

1

SbMATE

Non-synonymous SNP

15,851,598 bp, G/A; 15,851,639 bp, C/T; 15,851,643 bp, G/C; 15,851,644 bp, G/C; 15,857,015 bp, G/A

Non-frameshift insertion

15,851,633 bp, −/GGT

Sobic.001G185500

1

SbMATE

Non-frameshift insertion

15,867,230 bp, −/GCACGG

Sobic.001G185600

1

SbMATE

Non-synonymous SNP

15,877,514 bp, G/T; 158,77,530 bp, T/A; 15,879,898 bp, T/G

Non-frameshift deletion

15,880,626 bp, ACCGGCGCC/−

Sobic.004G349550

4

SbMATE

Non-frameshift insertion

67,834,717 bp, −/GCTGCT

Sobic.004G349600

4

SbMATE

Non-synonymous SNP

67,848,132 bp, C/G; 67,848,135 bp, C/G; 67,848,250 bp, T/G

Sobic.007G165500

7

SbMATE

Non-synonymous SNP

60,025,990 bp, C/A

Sobic.001G360800

1

SbF3′5′H

Non-synonymous SNP

65,069,116 bp, T/C

Sobic.001G543900

1

SbAHA10

Non-synonymous SNP

80,740,375 bp, C/G

Sobic.003G436400

3

SbAHA10

Non-frameshift insertion

73,733,903 bp, −/CCG

Sobic.010G063700

10

SbAHA10

Non-synonymous SNP

5,033,142 bp, C/A; 5,033,614 bp, C/T; 5,033,877 bp, C/A; 5,034,044 bp, C/T; 5,034,053 bp, G/C

Frameshift insertion

5,032,581 bp, −/GC; 5,032,758 bp, −/GAGC; 5,033,017 bp, −/ATCT

Non-frameshift deletion

5,032,669 bp, GTGCTGTTC/−

Non-frameshift insertion

5,033,742 bp, −/GGG;

5,034,105 bp, −/TTCCAC

Gain of stop codons

5,034,223 bp, −/CTATTTCA

Sobic.010G207800

10

SbAHA10

Non-synonymous SNP

55,088,876 bp, A/C

Sobic.002G117500

2

SbSGT

Non-synonymous SNP

14,508,960 bp, C/A

Sobic.002G310500

2

SbCHS

Non-synonymous SNP

68,442,264 bp, A/C; 68,442,283 bp, G/A

Sobic.004G179000

4

SbCHS

Non-synonymous SNP

53,190,344 bp, C/T

Sobic.005G135600

5

SbCHS

Non-synonymous SNP

58,503,342 bp, T/A; 58,503,472 bp, T/C; 58,503,507 bp, G/A; 58,503,555 bp, C/G

Sobic.005G136200

5

SbCHS

Non-synonymous SNP

58,859,286 bp, C/G

Sobic.005G136300

5

SbCHS

Non-synonymous SNP

58,881,162 bp, G/A

Sobic.005G137100

5

SbCHS

Non-synonymous SNP

58,943,632 bp, C/T

Sobic.008G036800

8

SbCHS

Non-synonymous SNP

3,477,776 bp, G/A

Non-frameshift deletion

3,477,795 bp, ACG/−

Sobic.003G230900

3

SbDFR

Non-synonymous SNP

57,029,960 bp, C/T

Sobic.003G231000

3

SbDFR

Non-frameshift deletion

57,041,941 bp, CTGGGA/−

Sobic.004G050200

4

SbDFR

Non-frameshift deletion

4,052,019 bp, AAC/−

Sobic.009G043800

9

SbDFR

Non-synonymous SNP

4,149,752 bp, T/C; 4,149,842 bp, G/A; 4,149,896 bp, G/T; 4,149,998 bp, T/C; 4,150,031 bp, C/G

Sobic.004G200900

4

SbF3′H

Non-synonymous SNP

55,234,140 bp, T/G

Non-frameshift deletion

55,233,739 bp, CGGGAA/−

Sobic.009G162500

9

SbF3′H

Non-synonymous SNP

51,944,205 bp, A/G; 51,948,174 bp, C/G

Sobic.004G236000

4

SbLAC15

Non-synonymous SNP

58,382,355 bp, G/A; 58,382,419 bp, G/A; 58,383,602 bp, A/G; 28,383,682 bp, G/T

Sobic.004G236100

4

SbLAC15

Non-synonymous SNP

58,391,947 bp, C/T

Frameshift deletion

58,392,294 bp, CTAC/−

Sobic.005G156700

5

SbLAC15

Non-synonymous SNP

62,814,031 bp, G/A; 62,814,043 bp, A/G; 62,814,250 bp. C/G

Non-frameshift deletion

62,816,156 bp, CGTCAACGT/−

Frameshift deletion

62,813,716 bp, C/−; 62,813,926 bp, A/−; 62,814,183 bp, C/−

Frameshift insertion

62,813,832 bp, −/A; 62,814,474 bp, −/TA

Sobic.004G310100

4

SbFLS

Non-synonymous SNP

64,699,203 bp, G/A

Sobic.006G253900

6

SbF3H

Non-synonymous SNP

59,157,048 bp, A/T; 59,157,274 bp, C/T; 59,158,255 bp, T/A

Sobic.006G254000

6

SbF3H

Non-synonymous SNP

59,160,879 bp, A/C; 59,161,461 bp, G/A

Sobic.007G047300

7

SbOMT

Non-synonymous SNP

4,721,737 bp, G/C; 4,721,966 bp, C/T; 4,724,116 bp, T/C

Sobic.010G052200

10

SbOMT

Non-synonymous SNP

4,072,017 bp, C/G

Sobic.008G030100

8

SbCHI

Non-synonymous SNP

2,684,008 bp, C/G