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Table 1 Runtime a of different functions with two pedigree data

From: ggroups: an R package for pedigree and genetic groups data

package::functionTime bTime c
ggroups::tabA13m:56s
pedigree::makeA37s
ggroups::buildA2s
pedigreemm::getA1s
AGHmatrix::Amatrix1s
pedigree::calcInbreeding2s1s
pedigreemm::inbreeding1s1s
ggroups::tabAinv5m:28s1s
pedigree::makeAinv2s1s
pedigreemm::getAInv1s
ggroups::qmatL2s
ggroups::qmatL7m:27s4s
ggroups::qmatXL3m:31s5s
nadiv::ggcontrib1s
ggroups::tabD39s
ggroups::buildD2m
AGHmatrix::Amatrixd1m:24s
ggroups::rg41s e4s e
ggroups::inb35s e3s e
ggroups::tabDinv1m:29s
ggroups::tab2mat31s f
ggroups::mat2tab4s f
  1. aMeasured on an octa-core Intel(R) Core(TM) i7-8650U with 16 Gb of RAM, and runtimes shorter than 1s are presented as 1s
  2. bA pedigree of 57,341 Mexican Braunvieh cattle (2,746 sires, 27,015 dams, and 8 genetic groups)
  3. cA subset of 3,000 animals (482 sires, and 1,855 dams) from b
  4. ddominance=TRUE
  5. e100 reiterations on random samples
  6. fFor the additive genetic relationship matrix