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Table 2 Comparison results between STRScan and CE for 9947A in the Ion S5 dataset

From: STRsearch: a new pipeline for targeted profiling of short tandem repeats in massively parallel sequencing data

Marker

Repeat motif1

Alleles (a1, a2)

Supporting reads (a1, a2)

Alleles correction2 (a1, a2)

CE

D1S1677

(TTCC)15

13, 14

1323, 1103

–

13, 14

D1S1656

(CCTA)1(TCTA)16

19, 18

2493, 532

19, 19

18.3, 18.3

TPOX

(AATG)8

8, 7

4552, 184

8, 8

8, 8

D2S441

(TCTA)12

10, 14

2134, 1825

–

10, 14

D2S1776

(AGAT)11

10, 9

5559, 320

10, 10

10, 10

D2S1338

(GGAA)2(GGAC)1(GGAA)13(GGCA)7

23, 22

752, 95

23, 23

19, 23

D3S1358

(TCTA)1(TCTG)1(TCTA)14

15, 14

3054, 2966

–

14, 15

D3S4529

(GATA)4AATA(GATA)7

11, 10

2713, 120

11, 11

13, 13

D4S2408

(ATCT)9

10, 9

993, 776

–

9, 10

FGA

(GGAA)2GGAG(AAAG)14AGAAAAAA(GAAA)3

20, 21

229, 124

–

23, 24

D5S2800

(GGTA)3(GACA)8(GATA)3(GATT)3

14, 13

1615, 66

14, 14

14, 23

D5S818

(ATCT)11

11, 10

3734, 426

11, 11

11, 11

CSF1PO

(ATCT)14

10, 12

2442, 1996

–

10, 12

D6S1043

(ATCT)12

12, 18

3563, 2567

–

12, 18

D6S474

(AGAT)5(GATA)12

14, 18

3063, 2052

–

13, 17

D7S820

(TATC)13

10, 11

1544, 554

10, 10

10, 11

D8S1179

(TCTA)1(TCTG)1(TCTA)11

13, 12

2665, 275

13, 13

13, 13

D10S1248

(GGAA)13

15, 13

1327, 1057

–

13, 15

THO1

(AATG)7ATG(AATG)0

9, 9

3298, 122

9, 9

8, 9.3

vWA

(TAGA)11(CAGA)5TAGA

NA

0, 0

–

17, 18

D12S391

(AGAT)11(AGAC)7AGAT

NA

0, 0

–

18, 20

D12ATA63

(TTG)3(TTA)10

12, 11

3478, 417

12, 12

13, 13

D13S317

(TATC)11

11, 10

3516, 196

11, 11

11, 11

D14S1434

(CTGT)3(CTAT)10

11, 13

2236, 1679

–

11, 13

Penta E

(TCTTT)5

13, 12

629, 624

–

12, 13

D16S539

(GATA)11

11, 12

4105, 3085

–

11, 12

D18S51

(AGAA)18

15, 19

1300, 934

–

15, 19

D19S433

(CCTT)12cctaCCTTctttCCTT

NA

0, 0

–

14, 15

D21S11

(TCTA)4(TCTG)6(TCTA)3ta(TCTA)3tca(TCTA)2tccata(TCTA)11

30, 29

2833, 301

30, 30

30, 30

Penta D

(AAAGA)13

12, 13

53, 1

12, 12

12, 12

D22S1045

(ATT)14ACT(ATT)2

10, 13

2109, 1390

–

11, 14

  1. 1Reference sequence repeat region sequence structure based on the latest forensic STR sequence guide with modifications to meet requirements of STRScan
  2. 2Alleles correction according to the stutter ratio, which is 0.5 in this study. ‘-’, not applicable