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Table 1 Comparison results between STRsearch and CE for 9947A in the Ion S5 dataset

From: STRsearch: a new pipeline for targeted profiling of short tandem repeats in massively parallel sequencing data

Marker

STR sequence sturucture1

Alleles (a1, a2)

Supporting reads (a1, a2)

Alleles correction2 (a1, a2)

Allele sequences (a1, a2)

CE

D1S1677

[TTCC]n

13, 14

592, 498

–

[TTCC]13, [TTCC]14

13, 14

D1S1656

CCTA [TCTA]n

18.3, 19.1

1182, 378

18.3, 18.3

CCTA [TCTA]13 TCATCTATCTATCTATCTA, CCTA [TCTA]13 TCATCTATCTATCTATCTACA

18.3, 18.3

TPOX

[AATG]n

8, 7

2554, 95

8, 8

[AATG]8, [AATG]7

8, 8

D2S441

[TCTA]n

10, 14

1007, 874

–

[TCTA]8 TCTGTCTA, [TCTA]11 TTTATCTATCTA

10, 14

D2S1776

[AGAT]n

10, 9

2825, 172

10, 10

[AGAT]10, [AGAT]9

10, 10

D2S1338

[GGAA]n GGAC [GGAA]n [GGCA]n

19, 23

718, 715

–

[GGAA]12 [GGCA]7, [GGAA]2 GGAC [GGAA]13 [GGCA]7

19, 23

D3S1358

[TCTA]n [TCTG]n [TCTA]n

15, 14

2052, 1916

–

[TCTA]1 [TCTG]2 [TCTA]12, [TCTA]1 [TCTG]2 [TCTA]11

14, 15

D3S4529

[GATA]n AATA [GATA]n

12, 11

1886, 65

12, 12

[GATA]4 AATA [GATA]7, [GATA]4 AATA [GATA]6

13, 13

D4S2408

[ATCT]n

10, 9

98, 56

–

[ATCT]10, [ATCT]9

9, 10

FGA

[GGAA]n GGAG [AAAG]n AGAA AAAA [GAAA]n

7.5, 8.5

693, 27

7.5, 7.5

[GGAA]2 GGAG [AAAG]4 AGAA, [GGAA]2 GGAG [AAAG]5 AGAA

23, 24

D5S2800

[GGTA]n [GACA]n [GATA]n [GATT]n

14, 23

1130, 876

–

[GGTA]3 [GACA]6 [GATA]2 [GATT]3, [GGTA]9 [GACA]6 [GATA]3 [GATT]5

14, 23

D5S818

[ATCT]n

11, 11

2373, 295

11, 11

[ATCT]11, [ATCT]11 T

11, 11

CSF1PO

[ATCT]n

10, 12

1348, 1178

–

[ATCT]10, [ATCT]12

10, 12

D6S1043

[ATCT]n

12, 18

1693, 1263

–

[ATCT]12, ATCTATCTATCTATCTATCTATGT [ATCT]12

12, 18

D6S474

[AGAT]n [GATA]n

14, 18

1898, 1304

–

[AGAT]5 [GATA]9, [AGAT]5 [GATA]13

13, 17

D7S820

[TATC]n

10, 11

1133, 823

–

[TATC]10, [TATC]11

10, 11

D8S1179

[TCTA]n [TCTG] n [TCTA]n

13, 13

1382, 998

–

[TCTA]1 [TCTG]1 [TCTA]11, [TCTA]13

13, 13

D10S1248

[GGAA]n

13, 15

815, 811

–

[GGAA]13, [GGAA]15

13, 15

TH01

[AATG]n ATG [AATG]n

8, 9.3

1728, 1527

–

[AATG]8, [AATG]6 ATG [AATG]3

8, 9.3

vWA

[TAGA]n [CAGA] n TAGA

17, 18

1330, 952

–

[TAGA]12 [CAGA]4 TAGA, [TAGA]13 [CAGA]4 TAGA

17, 18

D12S391

[AGAT]n GAT [AGAT] n [AGAC]n AGAT

18, 20

1171, 846

–

[AGAT]11 [AGAC]6 AGAT, [AGAT]12 [AGAC]7 AGAT

18, 20

D12ATA63

[TTG]n [TTA]n

13, 12

1697, 214

13, 13

[TTG]3 [TTA]10, [TTG]3 [TTA]9

13, 13

D13S317

[TATC]n

11, 10

2216, 177

11, 11

[TATC]11, [TATC]10

11, 11

D14S1434

[CTGT]n [CTAT]n

11, 13

1418, 1094

–

[CTGT]3 [CTAT]8, [CTGT]3 [CTAT]10

11, 13

Penta E

[TCTTT]n

12, 13

443, 425

–

[TCTTT]12, [TCTTT]13

12, 13

D16S539

[GATA]n

11, 12

2293, 1661

–

[GATA]11, [GATA]12

11, 12

D18S51

[AGAA]n

5, 3

2030, 159

5, 5

[AGAA]5, [AGAA]3

15, 19

D19S433

[CCTT]n ccta [CCTT] n cttt [CCTT]n

8, 7

859, 485

–

[CCTT]8, [CCTT]7

14, 15

D21S11

[TCTA]n [TCTG]n [TCTA]n ta [TCTA]n tca [TCTA]n tccata [TCTA]n TA [TCTA]n

30, 29

1450, 166

30, 30

[TCTA]6 [TCTG]5 [TCTA]3 ta [TCTA]3 tca [TCTA]2 tccata [TCTA]11, [TCTA]6 [TCTG]5 [TCTA]3 ta [TCTA]3 tca [TCTA]2 tccata [TCTA]10

30, 30

Penta D

[AAAGA]n

4, 3

206, 22

4, 4

[AAAGA]4, [AAAGA]3

12, 12

D22S1045

[ATT]n ACT [ATT]n

11, 14

1033, 616

–

[ATT]8 ACT [ATT]2, [ATT]11 ACT [ATT]2

11, 14

  1. 1Reference sequence repeat region sequence structure summary based on the most up-to-date forensic STR sequence guide
  2. 2Alleles correction according to the stutter ratio, which is 0.5 in this study. ‘-’, not applicable