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Table 2 Characteristics of SCoT and IRAP banding profiles produced in the studied Bletilla striata

From: Genetic diversity of Bletilla striata assessed by SCoT and IRAP markers

Primer name TB PB PP(%) PIC Nei’s Fst
IRAP       
Do-F + tar-R 7 5 71.43 0.87 0.45 0.009
DO-F + LIRE-del-F2 5 5 100 0.94 0.40 0.018
DO-F + LIRE-del-F1 9 8 88.89 0.96 0.23 0.012
LIRE-del-F1 + LIRE-Tar-R 7 7 100 0.98 0.35 0.023
LIRE3-R + LIRE-del-R 6 6 100 0.95 0.25 0.011
LIRE3-R + LIRE-TAR-R 6 6 100 0.97 0.36 0.023
LIRE3R + DO-R 6 6 100 0.91 0.38 0.019
LIRE-Tar-F + LIRE-del-F1 4 4 100 0.85 0.42 0.012
Total       
Mean 50 47     
SCOT 6.25 5.88 95.04 0.93 0.36 0.016
SC17 + SC30 10 10 100 0.98 0.36 0.007
SC5 + SC14 11 11 100 0.97 0.42 0.009
SC8 + SC11 6 6 100 0.92 0.39 0.012
SC14 + SC33 10 9 90 0.93 0.42 0.016
SC15 + SC32 11 11 100 0.97 0.33 0.016
SC16 + SC21 14 13 92.86 0.96 0.41 0.015
SC17 + SC20 14 13 92.86 0.92 0.33 0.013
SC18 + SC19 12 11 91.67 0.97 0.28 0.017
SC3 + SC34 7 7 100 0.94 0.34 0.021
SC4 + SC33 9 8 88.89 0.94 0.39 0.023
SC5 + SC32 10 9 90 0.97 0.38 0.017
SC6 + SC31 10 10 100 0.98 0.35 0.019
SC7 + SC30 9 9 100 0.98 0.41 0.017
SC9 + SC28 10 9 90 0.98 0.33 0.015
SC10 + SC27 12 12 100 0.96 0.39 0.017
SC11 + SC26 10 10 100 0.96 0.29 0.016
SC12 + SC25 12 11 91.67 0.95 0.38 0.019
SC13 + SC24 8 8 100 0.99 0.37 0.021
SC14 + SC23 13 13 100 0.99 0.34 0.023
SC15 + SC22 11 11 100 0.93 0.36 0.021
Total 209 201     
Mean 10.45 10.05 96.40 0.96 0.37 0.017
  1. Abbreviation: TB Total bands, PB Polymorphic bands, pp Polymorphic percentage, PIC Polymorphic Information Content, Fst Differentiation between populations index