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Table 2 Characteristics of SCoT and IRAP banding profiles produced in the studied Bletilla striata

From: Genetic diversity of Bletilla striata assessed by SCoT and IRAP markers

Primer name

TB

PB

PP(%)

PIC

Nei’s

Fst

IRAP

      

Do-F + tar-R

7

5

71.43

0.87

0.45

0.009

DO-F + LIRE-del-F2

5

5

100

0.94

0.40

0.018

DO-F + LIRE-del-F1

9

8

88.89

0.96

0.23

0.012

LIRE-del-F1 + LIRE-Tar-R

7

7

100

0.98

0.35

0.023

LIRE3-R + LIRE-del-R

6

6

100

0.95

0.25

0.011

LIRE3-R + LIRE-TAR-R

6

6

100

0.97

0.36

0.023

LIRE3R + DO-R

6

6

100

0.91

0.38

0.019

LIRE-Tar-F + LIRE-del-F1

4

4

100

0.85

0.42

0.012

Total

      

Mean

50

47

    

SCOT

6.25

5.88

95.04

0.93

0.36

0.016

SC17 + SC30

10

10

100

0.98

0.36

0.007

SC5 + SC14

11

11

100

0.97

0.42

0.009

SC8 + SC11

6

6

100

0.92

0.39

0.012

SC14 + SC33

10

9

90

0.93

0.42

0.016

SC15 + SC32

11

11

100

0.97

0.33

0.016

SC16 + SC21

14

13

92.86

0.96

0.41

0.015

SC17 + SC20

14

13

92.86

0.92

0.33

0.013

SC18 + SC19

12

11

91.67

0.97

0.28

0.017

SC3 + SC34

7

7

100

0.94

0.34

0.021

SC4 + SC33

9

8

88.89

0.94

0.39

0.023

SC5 + SC32

10

9

90

0.97

0.38

0.017

SC6 + SC31

10

10

100

0.98

0.35

0.019

SC7 + SC30

9

9

100

0.98

0.41

0.017

SC9 + SC28

10

9

90

0.98

0.33

0.015

SC10 + SC27

12

12

100

0.96

0.39

0.017

SC11 + SC26

10

10

100

0.96

0.29

0.016

SC12 + SC25

12

11

91.67

0.95

0.38

0.019

SC13 + SC24

8

8

100

0.99

0.37

0.021

SC14 + SC23

13

13

100

0.99

0.34

0.023

SC15 + SC22

11

11

100

0.93

0.36

0.021

Total

209

201

    

Mean

10.45

10.05

96.40

0.96

0.37

0.017

  1. Abbreviation: TB Total bands, PB Polymorphic bands, pp Polymorphic percentage, PIC Polymorphic Information Content, Fst Differentiation between populations index