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Table 1 Sequence depth and coverage statistics

From: Construction of a high-density genetic map: genotyping by sequencing (GBS) to map purple seed coat color (Psc) in hulless barley

Sample

Clean readsa

Mapping readsb

Mapping rate c

Average depthd

Coverage1×e

Coverage4×f

Kunlun10

13,850,762

13,395,851

96.72

24.19

8.33

4.33

Nierumuzha

14,133,242

13,682,278

96.81

24.55

8.39

4.37

  1. aNumber of reads used for the alignment
  2. bNumber of clean reads that mapped to the reference genome
  3. cThe percentage of reads that mapped to the genome
  4. dAverage sequencing depth
  5. ePercentage of the reference genome with at least 19 coverage
  6. fPercentage of the reference genome with at least 49 coverage