Table 3 B. oleracea Q-type C2H2 TF transcript length and expression
BoZFP | Ensembla | Bolbasea | Transcription Notesb,c |
|---|---|---|---|
BoZFP1 | cannot find transcript info for this gene | ||
BoZFP2 | 534 | found EAR motif in club root SRR but there is a gap between 112-132 | |
BoZFP3 | 669 | locus_18655, bud SRR630928 1–643 100% ID, seedling 102043,7–637, SNPs at 207, 537 and 541 | |
BoZFP4 | 1170 | bud and flower, missing 1–47 in bud with gap at 793–815, or 1–168 in flower up to 1100 | |
BoZFP5 | 786 | locus_27313, 2–746 with gap at 273–277 | |
BoZFP6 | 807 | locus_29791 in seedling 102043, 5–775 | |
BoZFP7 | 1050 | bud missing 1–66 bases, SNP at 372 | |
BoZFP8 | 474 | 102043 flower has most of the transcript seedling is missing L-box | |
BoZFP9 | 708 | locus_24740 and 40724, seedling 102043, 10 SNPs, 13–677 | |
BoZFP10 | 831 | locus_9351 stem also found in stem of 2, 1–824 | |
BoZFP11 | 1092 | flower with gap at 344–357 | |
BoZFP12 | 477 | 420 | flower |
BoZFP13 | 807 | 107140 leaf 100% ID, flower of 2 is 1–763 and bud is 7–772 with a gap 672–683 | |
BoZFP14 | 726 | locus_2060, seedling 107140, 1–718 SNP at 492, in 102043 find gap at ~ 450–550 | |
BoZFP15 | 615 | cannot find this transcript | |
BoZFP16 | 702 | seedling 102043, 2–670 | |
BoZFP17 | 543 | 102043 seedling | |
BoZFP18 | 453 | 102043 complete coverage of entire transcript | |
BoZFP19 | 882 | leaf of 107140 and flower of 2 covering 1–878 | |
BoZFP20 | 864 | 102043 flower 2–841 includes the EAR motif | |
BoZFP21 | 447 | 102043 seedling 3–447 only 1 SNP found | |
BoZFP22 | 540 | 102043 seedling | |
BoZFP23 | 717 | C1220 clubroot resistant, 1–717 with gap 327–352 and SNPs 173, 213, 471, 503, 653. 1–400 bases no gap or SNPs in 7 day cotyledon of broccoli | |
BoZFP24 | 792 | bud of SRR630928 | |
BoZFP25 | 690 | seedling 102043, 14–684 | |
BoZFP26 | 810 | 801 | locus_47213, seedling 102043 |
BoZFP27 | 1155 | 936 | clubroot resistant 27–862, gap 604–639 |
BoZFP28 | 507 | 107140 seedling | |
BoZFP29 | 696 | seedling 102043 | |
BoZFP30 | 570 | flower | |
BoZFP31 | 639 | 468 | flower M? Does not seem to coincide with map |
BoZFP32 | 777 | 96–618, 635–750 of 777 in bud does have 2ZFPs and EAR motif maybe even L-box. | |
BoZFP33 | 696 | locus_45812, stem 12–696 100% ID, leaf of 107140, 1–672 | |
BoZFP34 | 486 | 102043 seedling great coverage 100% 3–480 of 486 | |
BoZFP35 | 1038 | locus_43474 in bud 6–971 100% ID SRR630928, 102043 seedling, 1–893, 17 SNPs and a 3 base gap | |
BoZFP36 | 708 | 720 | locus_43800, leaf |
BoZFP37 | 798 | locus_ 26577, seedling 102043, 5–794 |