From: Molecular markers associated with aluminium tolerance in Sorghum bicolor
Marker type | Locus name | Primer sequences (5′ - 3′) | Repeat motif | Fragment size range (bp) | Ta (°C) |
---|---|---|---|---|---|
ISSR | ISSR_811 a | F/R: GAG AGA GAG AGA GAG AC | – | 1400 | 55 |
ISSR_835 a | F/R: AGA GAG AGA GAG AGA GCT C | – | Ca. 200 | 55 | |
ISSR_884 a,i | F/R: HBH ATC AGA GAG AGA GAG AG | – | Ca. 200 | 55 | |
SSR | Sb5_236 b | F: GCC AAG AGA AAC ACA AAC AA R: AGC AAT GTA TTT AGG CAA CAC A | (AG)20 | 160–208 | 55 |
Sb6_342 b | F: TGC TTG TGA GAG TGC CTC CCT R: GTG AAC CTG CTG CTT TAG TCG ATG | (AC)25 | 270–294 | 50 | |
Sb6_34 b | F: AAC AGC AGT AAT GCC ACA C R: TGA CTT GGT AGA GAA CTT GTC TTC | [(AC)/(CG)]15 | 188–208 | 55 | |
Xtxp34 c | F: TGG TTC GTA TCC TTC TCT ACA G R: CAT ATA CCT CCT CGT CGC TC | (CT)29 | 365 | 55 | |
STS | CTG29 d,e | F: ATG CAG TAT CTG CAG TAT CAT TT R: AAT CCG TCA GGT CAG CAA TC | – | 226–228 | 57 |
M181 d,e | F: AAG GCA ACA ACT GAG GCA CT R: TCG CTA GAG TGG TGC AAG AA | – | 169–174 | 55 | |
CTG29_3b f,g | F: TGG TGA TAT TAT TAA AAC TGT GTT A R: AAT CCG TCA GGT CAG CAA TC | – | 200 | 58 | |
SCAR | SCAR_811 h | F: ACG CAA GTT CCG AGG AGA A R: GAG AGA GAG AGA GAG ACA GAG GTT GTC | – | 1119 | 65 |
SCAR_884 h | F: AGA GAG AGA GAG AGC TCA CAC A R: AGA GAG AGA GAG AGG TGT TTT A | – | 226 and 446 | 61 |