Table 2 Comparison of the efficiency of EST-SSR, SRAP, and SCoT primers
Type of marker | SCoT | SRAP | EST-SST |
|---|---|---|---|
Number of primers | 38 | 40 | 40 |
Total number of bands(TNB) | 414 | 338 | 320 |
Average number of loci per assay | 10.89 | 8.45 | 8.00 |
Number of polymorphic bands(NPB) | 398 | 302 | 301 |
Percentage of polymorphic bands (PPB) | 96.14% | 89.35% | 94.06% |
Polymorphism information content (PIC) | 0.79 | 0.77 | 0.85 |
Resolving power (Rp) | 6.71 | 5.11 | 4.48 |
Effective multiplex ratio (EMR) | 10.47 | 7.55 | 7.53 |
Average band informativeness (Ibav) | 0.58 | 0.61 | 0.56 |
Marker index (MI) | 6.07 | 4.61 | 4.22 |