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Table 1 Summary of transcriptome data for persimmon

From: Characterizing the transcriptome and microsatellite markers for almond (Amygdalus communis L.) using the Illumina sequencing platform

Item

Number

1. Raw sequences and Assembly statistics

 Total reads

66,668,192

 Total nucleotides (bp)

10,000,228,800

 GC content percentage

46.77%

 Total unigenes (average length; N50; min-max length)

42,135 (988; 1714; 201–15,555)

 Mean RPKM value of unigenes (min-mix RPKM value)

14.8 (0–7109)

2. Bioinformatics annotations of mango fruit unigenes

 Gene annotation against Nr (%)

29,315 (69.6)

 Gene annotation against Swiss-Prot (%)

20,642 (49.0)

 Gene annotation against KEGG (%)

11,055 (26.2)

 Gene annotation against KOG (%)

16,794 (39.9)

 All annotation genes (%)

29,464 (69.9)

 Without annotation genes (%)

12,671 (30.1)

 GO Ontology (%)

  Biological process category

51,202;

  Cellular component category

24,483;

  Molecular function category

37,133;