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Table 2 Oligonucleotides used as PCR primers to amplify and sequence the gene encoding the Gα-subunit of the heterotrimeric G protein and to amplify gene fragments located in the genomic region surrounding this gene in a BAC pool screening

From: Mutations in the gene of the Gα subunit of the heterotrimeric G protein are the cause for the brachytic1 semi-dwarf phenotype in barley and applicable for practical breeding

Primer name

Sequence (5′ → 3′)

Template

Length of amplification product [bp]

bw-Fr1-F1

TGTCAAGATGATGGCTTCAG

Genomic DNA

703 (with bw-Fr1-R1)

bw_Fr1-Fseq

AAAAAGACGATGATGAAGC

Genomic DNA

 

bw-Fr1-R1

GATCGACGAGAGCATGAGAC

Genomic DNA

 

bw-Fr2-F1

GGCGAGGTAGAAAGCAAAAG

Genomic DNA

790 (with bw-Fr2-R1)

bw-Fr2-R1

TTTTGAGGTATCCATCCATCTC

Genomic DNA

 

bw-Fr3-F1

CGCACACAGTCAAAGGAAC

Genomic DNA

896 (with bw-Fr3-R1)

bw-Fr3-R1

GACAGCATTGCACAAGGAG

Genomic DNA

 

bw-Fr4-F1

TGTCCCAGATCCTCAAACTG

Genomic DNA

901 (with bw-Fr4-R1)

bw-Fr4-R1

TTGTCCCTTGTAAACTGTTGG

Genomic DNA

 

bw-Fr5-F1

TCCTCCTGCAAAATCTCTCC

Genomic DNA

903 (with bw-Fr5-R1)

bw-Fr5-R1

TTAGACTCGGCATTTTGAGG

Genomic DNA

 

bw-Fr6-F1

ACCTGAATGGCTGGATCTTC

Genomic DNA

857 (with bw-Fr6-R1)

bw-Fr6-R1

GCATAGTGGGGATTATTCAGG

Genomic DNA

 

bw-Fr7-F1

GGTCCAAACAGGTTCAGTTG

Genomic DNA

824 (with bw-Fr7-R1)

bw-Fr7-R1

GATTCTGCACGAGACAAAGG

Genomic DNA

 

bw-Fr8-F1

GGAATCAGTCTTTCCAGATCC

Genomic DNA

705 (with bw-Fr8-R2)

bw-Fr8-R2

CCAAAATACCCATACCAACC

Genomic DNA

 

bw-Fr9-F1

GAGCGAGCCAGAGATTTTG

Genomic DNA

711 (with bw-Fr9-R1)

bw-Fr9-R1

TGTATATGACGGAGCAGCAAG

Genomic DNA

 

bw_Fr9-Rseq

GCTTGTTGGTTGTAGCTCAG

Genomic DNA

 

IL130

CAACAATATGGGCATTACAT

BAC

350 (with IL131)

IL131

CGAGGAGTTCTACAAATCAT

BAC

 

IL132

CTTGCCCACTTACCAGGTGG

BAC

300 (with IL133)

IL133

ACGGGATCTCCTTATGGAGC

BAC

 

IL134

ATGATCGACTGCTACATCC

BAC

318 (with IL135)

IL135

GGTTCTGTCGTTGTACCTAG

BAC

 

IL136

CACCAAGCAGCAGATGATC

BAC

152 (with IL137)

IL137

CCAGTTTGTTGGATGTTTCC

BAC

 

IL138

GAGGGCTTCTATTGAAAGTG

BAC

510 (with IL139)

IL139

GGTACTGACCAACTGTTACG

BAC

 

IL140

AAAAGGCTGACTCAAAGACC

BAC

318 (with IL141)

IL141

CGACAAGCTCCATAAGGTAC

BAC

 

IL142

TCTGACCCAGAAACTTGATC

BAC

651 (with IL143)

IL143

GAAAGGGAGAGAGAAATCG

BAC

 

IL144

GGTCTGACCTCTTATTTCCC

BAC

512 (with IL145)

IL145

AAAGCGAGGCATTCACTAG

BAC

 

IL146

GCTCAAAGTGGGAATACGAG

BAC

475 (with IL147)

IL147

CTTGTGCTGCCAACTAGATG

BAC

 

IL148

AAGAGCATCCAGTGACAAG

BAC

633 (with IL149)

IL149

GGATCTCCGCTTAGGTATAG

BAC

 

IL150

CGCTTTCCCTATTTTGTCAG

BAC

576 (with IL151)

IL151

ACTTCACGGAGATTGATGC

BAC

 

IL152

AGCCAGCAATCCTTGTTAGC

BAC

510 (with IL153)

IL153

ACCTTGAGCCAGGGAAAAG

BAC

 

IL201

CTCTGGCTCGCTCATCAACC

RNA

1229 (with IL202)

IL202

AGCGTCTCATGCTCTCGTCG

RNA

 

IL203

GTAAACGAGGCAGAGGCAGC

RNA

461 (with IL204)

IL204

CAGTCGGGAACTTGCAGCAC

RNA

 

IL205

CGGAACTCAAGGGCTACACG

RNA

600 (with IL206)

IL206

CGAACAGCTCCTTGGTCTCC

RNA

 

IL207

AAATCTCTGGCTCGCTCATC

RNA

1389 (with IL208)

IL208

AGCACAAAGGAGTCACAAGG

RNA

 

IL209

ACTAGGAGGAAGCATGAGAC

RNA

1305 (with IL210)

IL210

CAATACAGAGTTGCGACACC

RNA