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Table 2 Cross-amplification of Brassica-derived SSR markers across seven species of Brassicaceae family

From: SSR marker variations in Brassica species provide insight into the origin and evolution of Brassica amphidiploids

Sr.no.

Marker ID

Number of alleles

PIC value

  

B. nigra

B. juncea

B. rapa

B. napus

B. carinata

Eruca sativa

B. oleracea L.

 
    

ssp. toria

ssp. Yellow Sarson

ssp. Brown sarson

   

var. botrytis

var. capitata

 

A) B. nigra-derived SSRs

 

1

SB1937

1

1

2

3

2

3

1

1

3

3

0.54

2

SJ3627R

1

1

2

2

2

2

2

1

2

4

0.72

3

SA0306

2

3

3

3

3

3

3

2

2

3

0.62

4

SJ84165

1

1

1

2

2

3

1

3

2

3

0.64

5

SJ03104

2

1

1

1

1

1

2

2

1

1

0.57

6

SJ6842

2

1

2

3

2

4

2

3

2

2

0.75

7

SJ1536

1

1

1

1

1

1

2

1

1

1

0.04

8

SB0372

1

1

2

2

2

2

1

2

2

2

0.47

9

SB31138

1

1

3

1

1

2

2

2

2

2

0.45

10

SJ3874I

2

2

2

1

2

1

1

1

1

1

0.37

11

SJ34121

2

1

1

2

1

2

3

2

2

2

0.46

12

SB3140

2

2

2

2

2

2

1

2

2

2

0.56

13

SJ3640I

1

1

1

1

2

2

2

2

1

1

0.23

14

SJ6846

2

1

2

1

1

0

1

0

0

0

0.7

15

SJ8033

4

2

2

3

2

3

3

2

3

3

0.76

16

SJ0338

2

1

2

2

3

2

2

3

2

3

0.67

17

SB2141AI

1

1

1

1

1

1

2

1

1

1

0.16

18

SJ7079

2

1

1

1

1

1

1

2

1

0

0.39

19

SJ39119I

2

1

3

3

3

3

1

2

4

3

0.65

20

SB0202I

3

3

2

2

2

2

2

2

2

2

0.61

21

SJ3627R

1

1

1

1

1

2

2

1

2

4

0.71

22

SB2131

2

1

1

1

2

1

1

2

3

2

0.64

23

SJ4933

1

1

1

1

2

1

1

1

2

1

0.56

24

SB05631

1

1

1

1

1

1

1

1

1

1

-

25

SJ3838

2

2

1

2

2

2

2

1

1

1

0.47

26

SJ3302RI

1

1

1

1

1

1

1

1

1

1

-

27

Ni4F09

2

2

1

1

2

2

2

2

1

1

0.50

28

Ni2A12

2

1

1

1

1

1

1

2

1

1

0.53

29

Ni2A02

2

1

1

1

1

1

3

1

1

1

0.40

30

Ni3C05

1

3

2

3

4

1

3

4

2

2

0.74

31

Ni2D10

1

1

1

1

1

1

1

1

1

1

-

B) B. rapa-derived SSRs

 

32

BrgMS418

2

2

2

1

1

3

3

2

3

3

0.72

33

BrgMS68

2

1

1

1

2

1

1

2

1

2

0.32

34

BrgMS75

1

1

2

2

2

2

4

3

4

3

0.64

35

BrgMS804

1

1

1

1

1

3

2

1

1

1

0.34

36

BrgMS422

1

1

3

2

2

1

2

1

2

1

0.47

37

BrgMS426

1

1

2

1

3

1

1

1

1

1

0.14

38

BrgMS135

2

1

2

2

2

3

2

2

2

2

0.46

39

BrgMS1237

1

1

2

1

2

2

1

1

1

1

0.62

40

BrgMS801

1

1

1

1

1

1

1

2

1

2

0.45

41

BrgMS397

1

1

3

1

2

2

2

0

3

1

0.49

42

BrgMS521

1

1

1

1

1

1

1

1

1

1

0.25

43

BrgMS745

1

1

1

1

1

1

2

2

2

3

0.35

44

BrgMS432

1

1

2

1

1

1

1

1

1

1

0.04

45

BrgMS792

2

2

2

2

2

2

2

2

2

2

0.5

46

BrgMS334

3

3

3

3

3

3

3

3

3

3

0.67

47

BrgMS316

5

3

1

1

1

2

2

4

1

1

0.72

48

BrGMS4497

3

3

2

2

2

5

6

1

4

5

0.76

49

BrgMS372

2

2

2

1

3

3

1

3

1

1

0.65

50

BrgMS2766

1

1

1

1

2

1

2

1

1

2

0.61

51

BrgMS751

1

1

1

1

1

1

1

1

1

1

-

52

BrgMS413

1

1

1

1

1

1

1

1

1

1

-

53

BrgMS313

1

1

1

1

1

1

1

1

1

1

-

54

BrgMS359

2

1

1

2

1

2

1

1

2

2

0.39

55

BrgMS793

1

1

1

1

1

1

1

1

1

1

-

56

BrgMS430

1

1

2

1

2

1

1

1

1

1

0.33

57

BrgMS710

1

1

1

1

1

1

1

1

1

1

-

58

BrgMS1238

1

2

2

1

2

2

2

1

1

1

0.46

59

BrgMS412

1

1

2

1

3

2

1

1

2

1

0.41

60

BrgMS722

1

1

1

1

1

1

1

1

1

1

-

61

BrgMS787

2

2

2

3

3

2

2

1

1

2

0.66

62

BrgMS399

1

1

1

1

1

2

1

1

2

1

0.23

63

BrgMS713

2

2

3

2

4

4

2

1

2

1

0.71

64

BrgMS4508

2

1

4

2

2

3

2

1

3

2

0.72

65

BrgMS4533

3

1

2

1

2

2

2

2

1

2

0.58

66

BrgMS4536

2

2

2

2

2

2

1

1

1

1

0.46

67

BrgMS63

1

1

1

1

1

1

1

1

1

1

0.09

68

BrgMS490

1

1

1

1

2

2

1

4

1

3

0.59

69

BrgMS776

1

1

1

1

2

3

3

1

1

2

0.37

70

BrgMS961

1

1

1

1

3

2

1

1

2

2

0.52

71

BrgMS794

2

2

1

1

1

2

1

1

2

3

0.69

72

BrgMS724

1

1

2

2

2

3

1

1

1

1

0.31

73

BrgMS337

2

3

1

1

2

1

1

0

0

1

0.57

74

BrgMS70

4

3

2

1

2

2

0

0

0

0

0.71

75

BrgMS2767

2

2

2

2

2

1

1

2

2

2

0.42

76

BrgMS778

1

1

1

1

1

1

1

1

1

1

0.18

77

BrgMS802

2

1

2

2

1

2

1

1

1

2

0.62

78

BrgMS344

1

1

1

1

2

1

1

1

2

2

0.64

79

BrgMS783

1

1

1

1

2

3

1

1

1

1

0.52

80

BrgMS780

2

1

1

1

1

1

2

1

1

1

0.25

81

BrgMS350

1

1

1

1

1

1

1

1

0

1

-

82

BrgMS388

2

1

2

1

2

4

2

1

4

3

0.69

83

BrgMS60

1

1

1

1

1

2

2

1

1

1

0.14

84

BrgMS516

1

1

1

1

2

2

1

1

1

1

0.16

85

BrgMS777

3

3

3

2

2

3

3

2

2

2

0.57

86

BrgMS309

2

1

1

1

1

1

1

0

0

0

0.12

87

BrgMS338

3

4

3

2

2

4

2

0

2

2

0.81

88

BrgMS782

1

3

1

1

1

1

1

1

1

3

0.64

89

BrgMS457

1

3

3

3

2

2

3

2

1

1

0.71

90

BrgMS710

3

1

2

1

1

2

2

1

1

3

0.56

91

BrgMS732

4

3

2

1

4

3

3

3

3

2

0.68

92

BrgMS372

2

2

2

1

3

3

1

3

1

1

0.65

93

BrgMS339

2

1

1

2

4

2

1

0

2

1

0.71

94

BrgMS409

2

1

1

1

1

2

2

1

1

2

0.32

95

BrgMS753

1

1

1

1

1

1

3

2

3

4

0.55

96

BrgMS421

3

2

2

1

2

2

1

2

2

2

0.56

97

BrgMS799

2

2

2

2

3

2

1

2

1

1

0.54

98

BrgMS343

1

1

1

1

1

1

2

1

2

2

0.35

99

BrgMS638

1

1

2

3

2

2

2

2

2

2

0.60

100

BrgMS515

1

1

1

1

1

1

1

2

1

1

0.05

101

BrgMS354

1

1

1

1

1

1

1

1

1

1

-

102

BrgMS777

1

1

1

1

1

1

1

1

1

1

-

103

BRMS-002

2

2

2

2

2

2

2

2

2

2

0.56

104

BRMS-016

2

1

1

1

1

2

3

2

2

2

0.67

105

BRMS-011

1

1

2

4

3

2

0

0

0

0

0.72

106

BRMS-005

2

1

2

1

3

2

1

1

1

1

0.65

107

BRMS-003

1

1

1

1

2

2

1

1

1

1

0.47

108

BRMS-029

1

2

1

1

2

2

1

2

1

1

0.48

109

BRMS-007

2

3

1

1

2

3

1

1

1

1

0.78

110

BRMS-015

2

2

2

1

2

2

2

1

3

2

0.49

111

BRMS-006

4

2

3

1

2

4

2

0

0

0

0.75

112

BRMS-014

1

1

1

1

1

1

1

1

1

1

-

113

BRMS-033

1

1

1

1

1

1

1

1

1

1

-

C) B. napus-derived SSRs

 

114

MB4

2

2

1

1

1

1

2

1

1

1

0.47

115

MR52a

2

1

2

1

1

3

2

1

2

2

0.53

116

MR33

1

1

1

1

1

1

1

1

1

1

-

117

MR176

2

5

4

2

3

3

2

1

3

2

0.77

118

MB5

1

1

1

1

1

1

1

1

1

1

-

D) B. oleracea-derived SSRs

 

119

sORA43

1

3

2

4

3

2

2

1

1

3

0.68

120

Ol09A01

1

1

1

1

1

1

1

1

1

1

-

121

Ol10B01

2

2

2

4

3

3

1

1

2

2

0.73

122

Ol10B07

0

1

1

2

1

3

3

0

3

5

0.79

123

Ol10B11

3

3

3

3

2

3

3

1

1

2

0.81

124

sORA26

2

2

2

2

2

3

1

3

1

2

0.59