Table 2 Summary of sequences analysis
Sample | Raw reads | Clean reads | Clean bases | Q20 (%) | Q30 (%) | GC (%) |
|---|---|---|---|---|---|---|
A1-0 | 33,244,262 | 30,036,644 | 3.51Â G | 99.43 | 98.43 | 46.00 |
A2-0 | 67,111,312 | 59,313,064 | 6.97Â G | 99.25 | 97.94 | 46.38 |
A1-1 | 75,018,602 | 66,678,644 | 7.80Â G | 99.28 | 98.03 | 45.41 |
A2-1 | 50,426,168 | 45,822,060 | 5.38Â G | 99.44 | 98.43 | 45.49 |
A1-3 | 42,772,046 | 38,114,654 | 4.45Â G | 99.27 | 97.99 | 46.08 |
A2-3 | 65,192,034 | 57,586,408 | 6.76Â G | 99.25 | 97.93 | 45.66 |
A1-6 | 46,008,224 | 41,153,398 | 4.81Â G | 99.27 | 97.98 | 45.46 |
A2-6 | 68,608,076 | 60,487,348 | 7.09Â G | 99.25 | 97.95 | 45.43 |
A1-12 | 75,873,652 | 67,335,634 | 7.90Â G | 99.16 | 97.69 | 45.21 |
A2-12 | 71,639,840 | 63,319,898 | 7.43Â G | 99.24 | 97.91 | 45.16 |
Total | 595,894,216 | 529,847,752 | 62.10 G | – | – | – |