Table 5 Mungbean SNPs detected by genotyping by sequencing among the mapping parents NM92, NM94, TC1966 and V2802 and targeted for genotyping by tetra markers and CEL-I
From: PCR-based assays for validation of single nucleotide polymorphism markers in rice and mungbean
GBS data | Sequencing data | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Locus name | Primer name | SNP Position in PCR fragment | NM92 | TC1966 | NM94 | V2802 | NM92 | TC1966 | NM94 | V2802 |
1:26,370,595 | tetra_6 | 144 | T | A | T | T | T | A | T | T |
2:23,741,639 | tetra_7 | 181 | T | T | T | A | T | T | T | A |
3:11,561,441 | tetra_8 | - | C | G | C | C | C | C | c | c |
3:10,830,938 | tetra_9 | 200 | G | G | G | A | G | G | G | A |
5:9,090,455 | tetra_10 | - | G | A | G | G | G, | G | G | G |
7:13,713,780 | tetra_11 | - | A | A | A | G | A | A | A | A |
10:3,159,416 | tetra_12 | 171 | C | G | C | G | C | G | C | G |
12:9,262,432 | tetra_13 | 140 | T | C | C | C | T | C | C | C |