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Table 4 SNPs among rice landraces selected from Golden Gate genotyping data

From: PCR-based assays for validation of single nucleotide polymorphism markers in rice and mungbean

Golden Gate data Sequencing data
Locus name Primer name Ref Var R1 R4 R5 R7 R10 R15 R17 R18 R20 R21 R25
4:22435296 tetra_1 G A G G G G G A G G G G G
5:44806 tetra_2 C G G C C S C C C C C C C
6:14504992 tetra_3 G A G G G G G G G G G R A
7:3650191 tetra_4 A C C A A A A A A A A A A
9:6982338 tetra_5 C T C C C C C C C C C C C
  1. Ref.: reference sequence, Var.: variant. R1 – R25: rice landrace accession number