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Table 4 SNPs among rice landraces selected from Golden Gate genotyping data

From: PCR-based assays for validation of single nucleotide polymorphism markers in rice and mungbean

Golden Gate data

Sequencing data

Locus name

Primer name

Ref

Var

R1

R4

R5

R7

R10

R15

R17

R18

R20

R21

R25

4:22435296

tetra_1

G

A

G

G

G

G

G

A

G

G

G

G

G

5:44806

tetra_2

C

G

G

C

C

S

C

C

C

C

C

C

C

6:14504992

tetra_3

G

A

G

G

G

G

G

G

G

G

G

R

A

7:3650191

tetra_4

A

C

C

A

A

A

A

A

A

A

A

A

A

9:6982338

tetra_5

C

T

C

C

C

C

C

C

C

C

C

C

C

  1. Ref.: reference sequence, Var.: variant. R1 – R25: rice landrace accession number
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Hereditas

ISSN: 1601-5223

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