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Table 6 Expression profiles of anthocyanin biosynthesis and transport candidate genes in spine grape

From: Transcriptome analysis of genes involved in anthocyanins biosynthesis and transport in berries of black and white spine grapes (Vitis davidii)

Gene_ID

RPKM value

Annotation

B1

B2

B3

W1

W2

W3

VIT_02s0033g00410

0.04

140.49

127.82

0.00

0.00

7.97

MYBA1

VIT_02s0033g00390

0.03

128.67

322.83

0.00

0.16

248.31

MYBA2

VIT_02s0033g00450

0.00

358.15

409.69

1.21

2.49

222.68

MYBA3

VIT_01s0011g04760

97.59

124.81

117.63

67.22

61.35

46.54

MYB4

VIT_14s0060g01010

24.39

38.55

27.01

3.48

17.65

20.80

bHLH

VIT_14s0108g01070

3.26

11.77

29.28

0.91

2.80

11.50

NAC

VIT_06s0004g02620

0.93

202.54

219.54

0.40

0.88

5.22

PAL

VIT_13s0019g04460

4.30

232.02

340.47

8.63

10.27

89.01

PAL2

VIT_16s0039g02040

9.04

30.83

9.78

12.76

14.09

10.35

4CL

VIT_16s0050g00390

9.67

45.72

129.44

15.09

20.51

45.27

4CL

VIT_05s0136g00260

8.42

4686.98

3990.83

5.62

4.05

41.12

CHS3

VIT_14s0068g00920

2.25

490.58

278.42

3.15

7.42

13.49

CHS2

VIT_13s0067g03820

48.72

700.54

545.88

33.78

26.95

91.33

CHI1

VIT_13s0067g02870

132.01

654.60

660.10

99.54

89.00

184.20

CHI2

VIT_04s0023g03370

6.98

561.89

230.96

3.71

2.35

6.48

F3H1

VIT_11s0016g01020

62.59

74.70

15.97

11.77

3.55

0.21

F3′H

VIT_17s0000g07200

6.74

47.12

57.77

12.97

17.55

53.45

F3′H

VIT_06s0009g02830

6.79

237.73

281.50

0.13

0.20

0.12

F3′5′H

VIT_06s0009g03010

2.84

262.91

424.92

0.23

0.32

0.26

F3′5′H

VIT_06s0009g02810

1.28

45.46

55.50

0.00

0.10

0.04

F3′5′H

VIT_06s0009g02920

2.99

75.91

133.90

0.06

0.09

0.04

F3′5′H

VIT_18s0001g12800

4.86

35.81

24.90

7.04

7.24

9.41

DFR

VIT_02s0025g04720

38.96

1659.75

1030.34

26.99

36.62

87.43

LDOX

VIT_16s0039g02230

0.04

1214.43

1009.98

0.08

0.04

0.16

UFGT

VIT_09s0002g06590

0.55

511.11

202.65

0.68

0.00

0.10

5GT

VIT_07s0031g00350

1.15

448.44

1191.02

16.33

50.62

648.28

OMT

VIT_01s0010g03510

9.97

736.92

512.06

0.87

0.12

0.03

OMT1

VIT_01s0010g03490

7.95

79.79

44.64

0.56

0.24

0.00

OMT2

VIT_14s0068g01440

21.78

11.03

4.82

2.91

0.93

0.39

AT

VIT_03s0017g00870

0.00

246.75

227.53

0.02

0.00

0.02

3AT

VIT_12s0028g00920

48.17

23.64

20.90

19.40

18.62

16.04

GST3

VIT_04s0079g00690

0.03

3274.70

3166.24

0.22

0.06

0.14

GST4

VIT_19s0015g02690

8.25

238.49

58.89

3.48

5.57

26.74

GSTu25

VIT_19s0015g02730

5.81

84.17

96.10

1.79

4.27

27.43

GST5

VIT_19s0015g02880

21.32

192.30

211.83

27.78

28.43

70.32

GST

VIT_16s0050g00910

0.72

494.01

746.08

13.13

3.05

4.36

AM2

VIT_16s0050g02480

79.44

76.26

99.26

40.72

39.48

79.18

ABCC1

VIT_10s0003g04390

97.89

82.88

145.60

78.68

66.86

91.25

ABCC2

VIT_09s0002g02430

34.16

36.74

49.76

16.68

6.89

20.86

ABCC8

VIT_03s0017g01290

10.84

42.46

222.45

3.05

4.87

153.61

ABCG11

VIT_14s0128g00600

0.00

118.71

290.45

0.07

0.00

6.32

Unkown

  1. Expression values are shown in RPKM for each sample. The annotation was the results of the gene blast in swiss-prot. bHLH basic helix–loop-helix proteins, PAL phenylalanine ammonia lyase, 4CL 4-coumaroyl-coA synthase, CHS chalcone synthase, CHI chalcone isomerase, F3H flavanone-3β-hydroxylase, F3′H flavonoid-3′-hydroxylase, F3′5′H flavonoid-3′5′-hydroxylase, DFR dihydroflavonol 4-reductase, LDOX leucoanthocyanidin dioxygenase, UFGT UDP-glucose:flavonoid-3-O-glucosyltransferase, 5GT UDP-glucose: anthocyanin 5-O-glucosyltransferase, OMT O-methyltransferase, AT anthocyanin acyltransferases, GST glutathione S-transferase, AM anthoMATEs, ABCC ATP binding cassette
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