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Table 6 Expression profiles of anthocyanin biosynthesis and transport candidate genes in spine grape

From: Transcriptome analysis of genes involved in anthocyanins biosynthesis and transport in berries of black and white spine grapes (Vitis davidii)

Gene_ID RPKM value Annotation
B1 B2 B3 W1 W2 W3
VIT_02s0033g00410 0.04 140.49 127.82 0.00 0.00 7.97 MYBA1
VIT_02s0033g00390 0.03 128.67 322.83 0.00 0.16 248.31 MYBA2
VIT_02s0033g00450 0.00 358.15 409.69 1.21 2.49 222.68 MYBA3
VIT_01s0011g04760 97.59 124.81 117.63 67.22 61.35 46.54 MYB4
VIT_14s0060g01010 24.39 38.55 27.01 3.48 17.65 20.80 bHLH
VIT_14s0108g01070 3.26 11.77 29.28 0.91 2.80 11.50 NAC
VIT_06s0004g02620 0.93 202.54 219.54 0.40 0.88 5.22 PAL
VIT_13s0019g04460 4.30 232.02 340.47 8.63 10.27 89.01 PAL2
VIT_16s0039g02040 9.04 30.83 9.78 12.76 14.09 10.35 4CL
VIT_16s0050g00390 9.67 45.72 129.44 15.09 20.51 45.27 4CL
VIT_05s0136g00260 8.42 4686.98 3990.83 5.62 4.05 41.12 CHS3
VIT_14s0068g00920 2.25 490.58 278.42 3.15 7.42 13.49 CHS2
VIT_13s0067g03820 48.72 700.54 545.88 33.78 26.95 91.33 CHI1
VIT_13s0067g02870 132.01 654.60 660.10 99.54 89.00 184.20 CHI2
VIT_04s0023g03370 6.98 561.89 230.96 3.71 2.35 6.48 F3H1
VIT_11s0016g01020 62.59 74.70 15.97 11.77 3.55 0.21 F3′H
VIT_17s0000g07200 6.74 47.12 57.77 12.97 17.55 53.45 F3′H
VIT_06s0009g02830 6.79 237.73 281.50 0.13 0.20 0.12 F3′5′H
VIT_06s0009g03010 2.84 262.91 424.92 0.23 0.32 0.26 F3′5′H
VIT_06s0009g02810 1.28 45.46 55.50 0.00 0.10 0.04 F3′5′H
VIT_06s0009g02920 2.99 75.91 133.90 0.06 0.09 0.04 F3′5′H
VIT_18s0001g12800 4.86 35.81 24.90 7.04 7.24 9.41 DFR
VIT_02s0025g04720 38.96 1659.75 1030.34 26.99 36.62 87.43 LDOX
VIT_16s0039g02230 0.04 1214.43 1009.98 0.08 0.04 0.16 UFGT
VIT_09s0002g06590 0.55 511.11 202.65 0.68 0.00 0.10 5GT
VIT_07s0031g00350 1.15 448.44 1191.02 16.33 50.62 648.28 OMT
VIT_01s0010g03510 9.97 736.92 512.06 0.87 0.12 0.03 OMT1
VIT_01s0010g03490 7.95 79.79 44.64 0.56 0.24 0.00 OMT2
VIT_14s0068g01440 21.78 11.03 4.82 2.91 0.93 0.39 AT
VIT_03s0017g00870 0.00 246.75 227.53 0.02 0.00 0.02 3AT
VIT_12s0028g00920 48.17 23.64 20.90 19.40 18.62 16.04 GST3
VIT_04s0079g00690 0.03 3274.70 3166.24 0.22 0.06 0.14 GST4
VIT_19s0015g02690 8.25 238.49 58.89 3.48 5.57 26.74 GSTu25
VIT_19s0015g02730 5.81 84.17 96.10 1.79 4.27 27.43 GST5
VIT_19s0015g02880 21.32 192.30 211.83 27.78 28.43 70.32 GST
VIT_16s0050g00910 0.72 494.01 746.08 13.13 3.05 4.36 AM2
VIT_16s0050g02480 79.44 76.26 99.26 40.72 39.48 79.18 ABCC1
VIT_10s0003g04390 97.89 82.88 145.60 78.68 66.86 91.25 ABCC2
VIT_09s0002g02430 34.16 36.74 49.76 16.68 6.89 20.86 ABCC8
VIT_03s0017g01290 10.84 42.46 222.45 3.05 4.87 153.61 ABCG11
VIT_14s0128g00600 0.00 118.71 290.45 0.07 0.00 6.32 Unkown
  1. Expression values are shown in RPKM for each sample. The annotation was the results of the gene blast in swiss-prot. bHLH basic helix–loop-helix proteins, PAL phenylalanine ammonia lyase, 4CL 4-coumaroyl-coA synthase, CHS chalcone synthase, CHI chalcone isomerase, F3H flavanone-3β-hydroxylase, F3′H flavonoid-3′-hydroxylase, F3′5′H flavonoid-3′5′-hydroxylase, DFR dihydroflavonol 4-reductase, LDOX leucoanthocyanidin dioxygenase, UFGT UDP-glucose:flavonoid-3-O-glucosyltransferase, 5GT UDP-glucose: anthocyanin 5-O-glucosyltransferase, OMT O-methyltransferase, AT anthocyanin acyltransferases, GST glutathione S-transferase, AM anthoMATEs, ABCC ATP binding cassette