Skip to main content

Table 5 The differential expression genes in the KEGG pathway of flavonoid biosynthesis

From: Transcriptome analysis of genes involved in anthocyanins biosynthesis and transport in berries of black and white spine grapes (Vitis davidii)

Gene_ID RPKM value Annotation
B1 B2 B3 W1 W2 W3
VIT_02s0033g00410 0.04 140.49 127.82 0.00 0.00 7.97 MYBA1
VIT_00s0361g00040 2.79 1.66 0.63 2.92 1.88 0.67 ANR
VIT_01s0011g02960 5.94 1.75 0.42 1.85 0.70 0.78 LAR1
VIT_02s0025g04720 38.96 1659.75 1030.34 26.99 36.62 87.43 LDOX
VIT_03s0063g00140 0.09 0.30 7.61 0.44 1.01 4.66 OMT
VIT_04s0023g03370 6.98 561.89 230.96 3.71 2.35 6.48 F3H
VIT_05s0136g00260 8.42 4686.98 3990.83 5.62 4.05 41.12 CHS
VIT_06s0004g08150 23.71 109.70 79.78 29.92 18.20 42.08 Trans-cinnamate 4-monooxygenase
VIT_06s0009g02830 6.79 237.73 281.50 0.13 0.20 0.12 F3′5′H
VIT_06s0009g02860 0.05 6.73 1.89 0 0 0 F3′5′H
VIT_06s0009g03050 0 0.04 0.57 0 0 0 F3′5′H
VIT_07s0031g00350 1.15 448.44 1191.02 16.33 50.62 648.28 OMT
VIT_08s0040g00780 11.03 40.57 48.50 8.59 8.74 29.68 Cytochrome P450
VIT_11s0016g02610 1.04 1.64 1.03 0.07 0 0 OMT
VIT_11s0065g00350 0.02 0.57 0.60 0.05 0.82 0.10 Trans-cinnamate 4-monooxygenase
VIT_12s0028g03110 2.76 0.12 0.04 1.62 0.59 0.18 OMT
VIT_13s0067g03820 48.72 700.54 545.88 33.78 26.95 91.33 CHI
VIT_14s0068g00920 2.25 490.58 278.42 3.15 7.42 13.49 CHS
VIT_14s0068g00930 0.20 2.97 2.04 2.17 6.63 1.69 CHS
VIT_16s0039g02350 2.31 3.48 13.25 0.00 0.17 1.02 DFR
VIT_17s0000g04150 14.12 10.12 20.50 9.55 11.13 9.64 LAR2
VIT_17s0000g07200 6.74 47.12 57.77 12.97 17.55 53.45 F3′H
VIT_17s0000g07210 0.60 3.35 3.37 0.53 0.79 2.40 F3′H
VIT_18s0001g03470 0.02 0.00 0.03 0.07 10.20 0.39 FLS
VIT_18s0001g12800 4.86 35.81 24.90 7.04 7.24 9.41 DFR
VIT_16s0039g02230 0.04 1214.43 1009.98 0.08 0.04 0.16 UFGT
VIT_18s0001g14310 45.39 120.46 67.93 46.73 66.97 124.79 Flavanone 3-dioxygenase
  1. Expression levels are shown in RPKM for each sample. The annotation was the results of the gene blast in Swiss-prot. ANR anthocyanidin reductase, LAR leucoanthocyanidin reductase, LDOX leucoanthocyanidin dioxygenase, OMT O-methyltransferase, F3H flavanone-3β-hydroxylase, CHS chalcone synthase, F3′5′H flavonoid-3′5′-hydroxylase, CHI chalcone isomerase, DFR dihydroflavonol 4-reductase, F3′H flavonoid-3′-hydroxylase, FLS flavonol synthase, UFGT UDP-glucose:flavonoid-3-O-glucosyltransferase;