Transcriptome analysis of genes involved in anthocyanins biosynthesis and transport in berries of black and white spine grapes (Vitis davidii)

Table 5 The differential expression genes in the KEGG pathway of flavonoid biosynthesis

Gene_ID	RPKM value						Annotation
Gene_ID	B1	B2	B3	W1	W2	W3	Annotation
VIT_02s0033g00410	0.04	140.49	127.82	0.00	0.00	7.97	MYBA1
VIT_00s0361g00040	2.79	1.66	0.63	2.92	1.88	0.67	ANR
VIT_01s0011g02960	5.94	1.75	0.42	1.85	0.70	0.78	LAR1
VIT_02s0025g04720	38.96	1659.75	1030.34	26.99	36.62	87.43	LDOX
VIT_03s0063g00140	0.09	0.30	7.61	0.44	1.01	4.66	OMT
VIT_04s0023g03370	6.98	561.89	230.96	3.71	2.35	6.48	F3H
VIT_05s0136g00260	8.42	4686.98	3990.83	5.62	4.05	41.12	CHS
VIT_06s0004g08150	23.71	109.70	79.78	29.92	18.20	42.08	Trans-cinnamate 4-monooxygenase
VIT_06s0009g02830	6.79	237.73	281.50	0.13	0.20	0.12	F3′5′H
VIT_06s0009g02860	0.05	6.73	1.89	0	0	0	F3′5′H
VIT_06s0009g03050	0	0.04	0.57	0	0	0	F3′5′H
VIT_07s0031g00350	1.15	448.44	1191.02	16.33	50.62	648.28	OMT
VIT_08s0040g00780	11.03	40.57	48.50	8.59	8.74	29.68	Cytochrome P450
VIT_11s0016g02610	1.04	1.64	1.03	0.07	0	0	OMT
VIT_11s0065g00350	0.02	0.57	0.60	0.05	0.82	0.10	Trans-cinnamate 4-monooxygenase
VIT_12s0028g03110	2.76	0.12	0.04	1.62	0.59	0.18	OMT
VIT_13s0067g03820	48.72	700.54	545.88	33.78	26.95	91.33	CHI
VIT_14s0068g00920	2.25	490.58	278.42	3.15	7.42	13.49	CHS
VIT_14s0068g00930	0.20	2.97	2.04	2.17	6.63	1.69	CHS
VIT_16s0039g02350	2.31	3.48	13.25	0.00	0.17	1.02	DFR
VIT_17s0000g04150	14.12	10.12	20.50	9.55	11.13	9.64	LAR2
VIT_17s0000g07200	6.74	47.12	57.77	12.97	17.55	53.45	F3′H
VIT_17s0000g07210	0.60	3.35	3.37	0.53	0.79	2.40	F3′H
VIT_18s0001g03470	0.02	0.00	0.03	0.07	10.20	0.39	FLS
VIT_18s0001g12800	4.86	35.81	24.90	7.04	7.24	9.41	DFR
VIT_16s0039g02230	0.04	1214.43	1009.98	0.08	0.04	0.16	UFGT
VIT_18s0001g14310	45.39	120.46	67.93	46.73	66.97	124.79	Flavanone 3-dioxygenase

Expression levels are shown in RPKM for each sample. The annotation was the results of the gene blast in Swiss-prot. ANR anthocyanidin reductase, LAR leucoanthocyanidin reductase, LDOX leucoanthocyanidin dioxygenase, OMT O-methyltransferase, F3H flavanone-3β-hydroxylase, CHS chalcone synthase, F3′5′H flavonoid-3′5′-hydroxylase, CHI chalcone isomerase, DFR dihydroflavonol 4-reductase, F3′H flavonoid-3′-hydroxylase, FLS flavonol synthase, UFGT UDP-glucose:flavonoid-3-O-glucosyltransferase;

ISSN: 1601-5223